Literature DB >> 25646507

A single-compartment model of calcium dynamics in nerve terminals and dendrites.

Fritjof Helmchen, David W Tank.   

Abstract

This introduction describes a single-compartment model of calcium dynamics that has been applied to fluorescence measurements of intracellular free calcium concentration ([Ca(2+)]i) changes in neurons. The model describes intracellular calcium handling under simplified conditions, for which analytical expressions for the amplitude and the time constants of [Ca(2+)]i changes can be explicitly derived. In particular, it reveals the dependence of the measured [Ca(2+)]i changes on the calcium indicator concentration. Applied to experimental data from small cells or subcellular compartments, the model equations have been extremely useful for obtaining quantitative information about essential parameters of Ca(2+) influx, buffering, and clearance. We illustrate also several changes that occur when the basic assumptions do not hold (e.g., when calcium diffusion, dye saturation, or kinetic effects become significant). Finally, we discuss how the changes in calcium dynamics, which are explained by the model, have been exploited for measuring properties of calcium-driven reactions, such as those regulating short-term synaptic enhancement, vesicle recycling, and adaptation.
© 2015 Cold Spring Harbor Laboratory Press.

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Year:  2015        PMID: 25646507     DOI: 10.1101/pdb.top085910

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  8 in total

1.  Diffusion of Ca2+ from Small Boutons en Passant into the Axon Shapes AP-Evoked Ca2+ Transients.

Authors:  Van Tran; Christian Stricker
Journal:  Biophys J       Date:  2018-07-26       Impact factor: 4.033

Review 2.  Calcium's role as nuanced modulator of cellular physiology in the brain.

Authors:  Hilaree N Frazier; Shaniya Maimaiti; Katie L Anderson; Lawrence D Brewer; John C Gant; Nada M Porter; Olivier Thibault
Journal:  Biochem Biophys Res Commun       Date:  2016-08-20       Impact factor: 3.575

3.  Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning.

Authors:  Farzaneh Najafi; Gamaleldin F Elsayed; Robin Cao; Eftychios Pnevmatikakis; Peter E Latham; John P Cunningham; Anne K Churchland
Journal:  Neuron       Date:  2019-11-18       Impact factor: 17.173

4.  Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods.

Authors:  Alexander Song; Jeff L Gauthier; Jonathan W Pillow; David W Tank; Adam S Charles
Journal:  J Neurosci Methods       Date:  2021-04-08       Impact factor: 2.987

5.  Slow-decaying presynaptic calcium dynamics gate long-lasting asynchronous release at the hippocampal mossy fiber to CA3 pyramidal cell synapse.

Authors:  Simon Chamberland; Yulia Timofeeva; Alesya Evstratova; Christopher A Norman; Kirill Volynski; Katalin Tóth
Journal:  Synapse       Date:  2020-07-16       Impact factor: 2.562

6.  Information Theoretic Approaches to Deciphering the Neural Code with Functional Fluorescence Imaging.

Authors:  Jason R Climer; Daniel A Dombeck
Journal:  eNeuro       Date:  2021-09-24

Review 7.  Review of data processing of functional optical microscopy for neuroscience.

Authors:  Hadas Benisty; Alexander Song; Gal Mishne; Adam S Charles
Journal:  Neurophotonics       Date:  2022-08-04       Impact factor: 4.212

Review 8.  Interpreting in vivo calcium signals from neuronal cell bodies, axons, and dendrites: a review.

Authors:  Farhan Ali; Alex C Kwan
Journal:  Neurophotonics       Date:  2019-07-30       Impact factor: 3.593

  8 in total

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