Literature DB >> 25645994

Utilising the resources of the International Knockout Mouse Consortium: the Australian experience.

Leanne M Cotton1, Michelle L Meilak, Tanya Templeton, Jose G Gonzales, Arianna Nenci, Melissa Cooney, Dirk Truman, Fleur Rodda, Alyce Lynas, Elizabeth Viney, Nadia Rosenthal, Deborah M Bianco, Moira K O'Bryan, Ian M Smyth.   

Abstract

Mouse models play a key role in the understanding gene function, human development and disease. In 2007, the Australian Government provided funding to establish the Monash University embryonic stem cell-to-mouse (ES2M) facility. This was part of the broader Australian Phenomics Network, a national infrastructure initiative aimed at maximising access to global resources for understanding gene function in the mouse. The remit of the ES2M facility is to provide subsidised access for Australian biomedical researchers to the ES cell resources available from the International Knockout Mouse Consortium (IKMC). The stated aim of the IKMC is to generate a genetically modified mouse ES cell line for all of the ~23,000 genes in the mouse genome. The principal function of the Monash University ES2M service is to import genetically modified ES cells into Australia and to convert them into live mice with the potential to study human disease. Through advantages of economy of scale and established relationships with ES cell repositories worldwide, we have created over 110 germline mouse strains sourced from all of the major ES providers worldwide. We comment on our experience in generating these mouse lines; providing a snapshot of a "clients" perspective of using the IKMC resource and one which we hope will serve as a guide to other institutions or organisations contemplating establishing a similar centralised service.

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Year:  2015        PMID: 25645994     DOI: 10.1007/s00335-015-9555-1

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  15 in total

1.  A new partner for the international knockout mouse consortium.

Authors:  Francis S Collins; Richard H Finnell; Janet Rossant; Wolfgang Wurst
Journal:  Cell       Date:  2007-04-20       Impact factor: 41.582

2.  Trisomy eight in ES cells is a common potential problem in gene targeting and interferes with germ line transmission.

Authors:  X Liu; H Wu; J Loring; S Hormuzdi; C M Disteche; P Bornstein; R Jaenisch
Journal:  Dev Dyn       Date:  1997-05       Impact factor: 3.780

3.  A conditional knockout resource for the genome-wide study of mouse gene function.

Authors:  William C Skarnes; Barry Rosen; Anthony P West; Manousos Koutsourakis; Wendy Bushell; Vivek Iyer; Alejandro O Mujica; Mark Thomas; Jennifer Harrow; Tony Cox; David Jackson; Jessica Severin; Patrick Biggs; Jun Fu; Michael Nefedov; Pieter J de Jong; A Francis Stewart; Allan Bradley
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

4.  High-throughput engineering of the mouse genome coupled with high-resolution expression analysis.

Authors:  David M Valenzuela; Andrew J Murphy; David Frendewey; Nicholas W Gale; Aris N Economides; Wojtek Auerbach; William T Poueymirou; Niels C Adams; Jose Rojas; Jason Yasenchak; Rostislav Chernomorsky; Marylene Boucher; Andrea L Elsasser; Lakeisha Esau; Jenny Zheng; Jennifer A Griffiths; Xiaorong Wang; Hong Su; Yingzi Xue; Melissa G Dominguez; Irene Noguera; Richard Torres; Lynn E Macdonald; A Francis Stewart; Thomas M DeChiara; George D Yancopoulos
Journal:  Nat Biotechnol       Date:  2003-05-05       Impact factor: 54.908

5.  One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.

Authors:  Haoyi Wang; Hui Yang; Chikdu S Shivalila; Meelad M Dawlaty; Albert W Cheng; Feng Zhang; Rudolf Jaenisch
Journal:  Cell       Date:  2013-05-02       Impact factor: 41.582

6.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

7.  Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans.

Authors:  Ann-Marie Mallon; Vivek Iyer; David Melvin; Hugh Morgan; Helen Parkinson; Steve D M Brown; Paul Flicek; William C Skarnes
Journal:  Mamm Genome       Date:  2012-09-19       Impact factor: 2.957

8.  The mammalian gene function resource: the International Knockout Mouse Consortium.

Authors:  Allan Bradley; Konstantinos Anastassiadis; Abdelkader Ayadi; James F Battey; Cindy Bell; Marie-Christine Birling; Joanna Bottomley; Steve D Brown; Antje Bürger; Carol J Bult; Wendy Bushell; Francis S Collins; Christian Desaintes; Brendan Doe; Aris Economides; Janan T Eppig; Richard H Finnell; Colin Fletcher; Martin Fray; David Frendewey; Roland H Friedel; Frank G Grosveld; Jens Hansen; Yann Hérault; Geoffrey Hicks; Andreas Hörlein; Richard Houghton; Martin Hrabé de Angelis; Danny Huylebroeck; Vivek Iyer; Pieter J de Jong; James A Kadin; Cornelia Kaloff; Karen Kennedy; Manousos Koutsourakis; K C Kent Lloyd; Susan Marschall; Jeremy Mason; Colin McKerlie; Michael P McLeod; Harald von Melchner; Mark Moore; Alejandro O Mujica; Andras Nagy; Mikhail Nefedov; Lauryl M Nutter; Guillaume Pavlovic; Jane L Peterson; Jonathan Pollock; Ramiro Ramirez-Solis; Derrick E Rancourt; Marcello Raspa; Jacques E Remacle; Martin Ringwald; Barry Rosen; Nadia Rosenthal; Janet Rossant; Patricia Ruiz Noppinger; Ed Ryder; Joel Zupicich Schick; Frank Schnütgen; Paul Schofield; Claudia Seisenberger; Mohammed Selloum; Elizabeth M Simpson; William C Skarnes; Damian Smedley; William L Stanford; A Francis Stewart; Kevin Stone; Kate Swan; Hamsa Tadepally; Lydia Teboul; Glauco P Tocchini-Valentini; David Valenzuela; Anthony P West; Ken-ichi Yamamura; Yuko Yoshinaga; Wolfgang Wurst
Journal:  Mamm Genome       Date:  2012-09-12       Impact factor: 2.957

9.  Agouti C57BL/6N embryonic stem cells for mouse genetic resources.

Authors:  Stephen J Pettitt; Qi Liang; Xin Y Rairdan; Jennifer L Moran; Haydn M Prosser; David R Beier; Kent C Lloyd; Allan Bradley; William C Skarnes
Journal:  Nat Methods       Date:  2009-06-14       Impact factor: 28.547

10.  Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes.

Authors:  Jacqueline K White; Anna-Karin Gerdin; Natasha A Karp; Ed Ryder; Marija Buljan; James N Bussell; Jennifer Salisbury; Simon Clare; Neil J Ingham; Christine Podrini; Richard Houghton; Jeanne Estabel; Joanna R Bottomley; David G Melvin; David Sunter; Niels C Adams; David Tannahill; Darren W Logan; Daniel G Macarthur; Jonathan Flint; Vinit B Mahajan; Stephen H Tsang; Ian Smyth; Fiona M Watt; William C Skarnes; Gordon Dougan; David J Adams; Ramiro Ramirez-Solis; Allan Bradley; Karen P Steel
Journal:  Cell       Date:  2013-07-18       Impact factor: 41.582

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  8 in total

1.  Efficiency comparison of B6(Cg)-Tyrc-2j /J and C57BL/6NTac embryos as hosts for the generation of knockout mice.

Authors:  Yu'e Ma; Lei He; Lijie Xiang; Jie Zhang; Jing Wang; Wenjing Zhu; Wenni Cao; Yichen Zhu; Man Gao; Fei Zhou; Zhiwei Liu
Journal:  Transgenic Res       Date:  2021-04-12       Impact factor: 2.788

2.  Regulation of mitochondrial metabolism in murine skeletal muscle by the medium-chain fatty acid receptor Gpr84.

Authors:  Magdalene K Montgomery; Brenna Osborne; Amanda E Brandon; Liam O'Reilly; Corrine E Fiveash; Simon H J Brown; Brendan P Wilkins; Azrah Samsudeen; Josephine Yu; Beena Devanapalli; Ashley Hertzog; Adviye A Tolun; Tomas Kavanagh; Antony A Cooper; Todd W Mitchell; Trevor J Biden; Nicola J Smith; Gregory J Cooney; Nigel Turner
Journal:  FASEB J       Date:  2019-08-15       Impact factor: 5.834

3.  Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study.

Authors:  James L J Coleman; Karen Brennan; Tony Ngo; Poornima Balaji; Robert M Graham; Nicola J Smith
Journal:  Front Endocrinol (Lausanne)       Date:  2015-06-30       Impact factor: 5.555

4.  Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction.

Authors:  Gemma F Codner; Loic Lindner; Adam Caulder; Marie Wattenhofer-Donzé; Adam Radage; Annelyse Mertz; Benjamin Eisenmann; Joffrey Mianné; Edward P Evans; Colin V Beechey; Martin D Fray; Marie-Christine Birling; Yann Hérault; Guillaume Pavlovic; Lydia Teboul
Journal:  BMC Cell Biol       Date:  2016-08-05       Impact factor: 4.241

5.  CRISPR/Cas9-Mediated Insertion of loxP Sites in the Mouse Dock7 Gene Provides an Effective Alternative to Use of Targeted Embryonic Stem Cells.

Authors:  Kathleen A Bishop; Anne Harrington; Evguenia Kouranova; Edward J Weinstein; Clifford J Rosen; Xiaoxia Cui; Lucy Liaw
Journal:  G3 (Bethesda)       Date:  2016-07-07       Impact factor: 3.154

6.  In vivo evidence that RBM5 is a tumour suppressor in the lung.

Authors:  Duangporn Jamsai; D Neil Watkins; Anne E O'Connor; D Jo Merriner; Selen Gursoy; Anthony D Bird; Beena Kumar; Alistair Miller; Timothy J Cole; Brendan J Jenkins; Moira K O'Bryan
Journal:  Sci Rep       Date:  2017-11-24       Impact factor: 4.379

Review 7.  Predicting human disease mutations and identifying drug targets from mouse gene knockout phenotyping campaigns.

Authors:  Robert Brommage; David R Powell; Peter Vogel
Journal:  Dis Model Mech       Date:  2019-05-07       Impact factor: 5.758

8.  SOX30 is required for male fertility in mice.

Authors:  Chun-Wei Allen Feng; Cassy Spiller; Donna J Merriner; Moira K O'Bryan; Josephine Bowles; Peter Koopman
Journal:  Sci Rep       Date:  2017-12-15       Impact factor: 4.379

  8 in total

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