Literature DB >> 25645700

Transcriptome of the human retina, retinal pigmented epithelium and choroid.

Lifeng Tian1, Krista L Kazmierkiewicz2, Anita S Bowman3, Mingyao Li4, Christine A Curcio5, Dwight E Stambolian6.   

Abstract

The retina and its adjacent supporting tissues - retinal pigmented epithelium (RPE) and choroid - are critical structures in human eyes required for normal visual perception. Abnormal changes in these layers have been implicated in diseases such as age-related macular degeneration and glaucoma. With the advent of high-throughput methods, such as serial analysis of gene expression, cDNA microarray, and RNA sequencing, there is unprecedented opportunity to facilitate our understanding of the normal retina, RPE, and choroid. This information can be used to identify dysfunction in age-related macular degeneration and glaucoma. In this review, we describe the current status in our understanding of these transcriptomes through the use of high-throughput techniques.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Age-related macular degeneration; Choroid; Glaucoma; RNA-Seq; Retina; Retinal pigmented epithelium; Serial analysis of gene expression; Transcriptome; cDNA microarray

Mesh:

Year:  2015        PMID: 25645700      PMCID: PMC4404213          DOI: 10.1016/j.ygeno.2015.01.008

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  52 in total

1.  Disease susceptibility of the human macula: differential gene transcription in the retinal pigmented epithelium/choroid.

Authors:  Monte J Radeke; Katie E Peterson; Lincoln V Johnson; Don H Anderson
Journal:  Exp Eye Res       Date:  2007-06-14       Impact factor: 3.467

2.  Whole genome expression profiling of normal human fetal and adult ocular tissues.

Authors:  Terri L Young; Felicia Hawthorne; Sheng Feng; Xiaoyan Luo; Elizabeth St Germain; Minyue Wang; Ravikanth Metlapally
Journal:  Exp Eye Res       Date:  2013-09-07       Impact factor: 3.467

3.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

4.  The Age-Related Eye Disease Study system for classifying age-related macular degeneration from stereoscopic color fundus photographs: the Age-Related Eye Disease Study Report Number 6.

Authors: 
Journal:  Am J Ophthalmol       Date:  2001-11       Impact factor: 5.258

5.  Transcriptome analysis and molecular signature of human retinal pigment epithelium.

Authors:  N V Strunnikova; A Maminishkis; J J Barb; F Wang; C Zhi; Y Sergeev; W Chen; A O Edwards; D Stambolian; G Abecasis; A Swaroop; P J Munson; S S Miller
Journal:  Hum Mol Genet       Date:  2010-04-01       Impact factor: 6.150

6.  Microarray analysis of gene expression in the aging human retina.

Authors:  Shigeo Yoshida; Beverly M Yashar; Suja Hiriyanna; Anand Swaroop
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

7.  A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes.

Authors:  Nicholas Katsanis; Kim C Worley; Guillermo Gonzalez; Stephen J Ansley; James R Lupski
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

8.  Novel retinal and cone photoreceptor transcripts revealed by human macular expression profiling.

Authors:  Daniel M Hornan; Stuart N Peirson; Alison J Hardcastle; Robert S Molday; Michael E Cheetham; Andrew R Webster
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-12       Impact factor: 4.799

9.  Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks.

Authors:  Aaron M Newman; Natasha B Gallo; Lisa S Hancox; Norma J Miller; Carolyn M Radeke; Michelle A Maloney; James B Cooper; Gregory S Hageman; Don H Anderson; Lincoln V Johnson; Monte J Radeke
Journal:  Genome Med       Date:  2012-02-24       Impact factor: 11.117

10.  The Retinome - defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium.

Authors:  Heidi L Schulz; Thomas Goetz; Juergen Kaschkoetoe; Bernhard H F Weber
Journal:  BMC Genomics       Date:  2004-07-29       Impact factor: 3.969

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  25 in total

1.  Identifying core biological processes distinguishing human eye tissues with precise systems-level gene expression analyses and weighted correlation networks.

Authors:  John M Bryan; Temesgen D Fufa; Kapil Bharti; Brian P Brooks; Robert B Hufnagel; David M McGaughey
Journal:  Hum Mol Genet       Date:  2018-10-01       Impact factor: 6.150

Review 2.  Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.

Authors:  Vijender Chaitankar; Gökhan Karakülah; Rinki Ratnapriya; Felipe O Giuste; Matthew J Brooks; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2016-06-11       Impact factor: 21.198

Review 3.  RNA expression in human retina.

Authors:  Mingyao Li; Randy J Zauhar; Clare Grazal; Christine A Curcio; Margaret M DeAngelis; Dwight Stambolian
Journal:  Hum Mol Genet       Date:  2017-08-01       Impact factor: 6.150

4.  Homocysteine mediates transcriptional changes of the inflammatory pathway signature genes in human retinal pigment epithelial cells.

Authors:  Mahavir Singh; Suresh C Tyagi
Journal:  Int J Ophthalmol       Date:  2017-05-18       Impact factor: 1.779

5.  Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

Authors:  Gungor Budak; Soma Dash; Rajneesh Srivastava; Salil A Lachke; Sarath Chandra Janga
Journal:  Exp Eye Res       Date:  2018-01-11       Impact factor: 3.467

6.  Identification of functional networks associated with cell death in the retina of OXYS rats during the development of retinopathy.

Authors:  Darya V Telegina; Elena E Korbolina; Nikita I Ershov; Nataliya G Kolosova; Oyuna S Kozhevnikova
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 7.  Promises and pitfalls of evaluating photoreceptor-based retinal disease with adaptive optics scanning light ophthalmoscopy (AOSLO).

Authors:  Niamh Wynne; Joseph Carroll; Jacque L Duncan
Journal:  Prog Retin Eye Res       Date:  2020-11-06       Impact factor: 19.704

8.  Involvement of Endoplasmic Reticulum Stress in TULP1 Induced Retinal Degeneration.

Authors:  Glenn P Lobo; Adrian Au; Philip D Kiser; Stephanie A Hagstrom
Journal:  PLoS One       Date:  2016-03-17       Impact factor: 3.240

Review 9.  Methods for culturing retinal pigment epithelial cells: a review of current protocols and future recommendations.

Authors:  Aaron H Fronk; Elizabeth Vargis
Journal:  J Tissue Eng       Date:  2016-07-12       Impact factor: 7.813

10.  Spaceflight decelerates the epigenetic clock orchestrated with a global alteration in DNA methylome and transcriptome in the mouse retina.

Authors:  Zhong Chen; Seta Stanbouly; Nina C Nishiyama; Xin Chen; Michael D Delp; Hongyu Qiu; Xiao W Mao; Charles Wang
Journal:  Precis Clin Med       Date:  2021-05-17
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