Literature DB >> 25642011

Dosage Effects of Salt and pH Stresses on Saccharomyces cerevisiae as Monitored via Metabolites by Using Two Dimensional NMR Spectroscopy.

Young Kee Chae1, Seol Hyun Kim1, James E Ellinger2, John L Markley2.   

Abstract

Saccharomyces cerevisiae, which is a common species of yeast, is by far the most extensively studied model of a eukaryote because although it is one of the simplest eukaryotes, its basic cellular processes resemble those of higher organisms. In addition, yeast is a commercially valuable organism for ethanol production. Since the yeast data can be extrapolated to the important aspects of higher organisms, many researchers have studied yeast metabolism under various conditions. In this report, we analyzed and compared metabolites of Saccharomyces cerevisiae under salt and pH stresses of various strengths by using two-dimensional NMR spectroscopy. A total of 31 metabolites were identified for most of the samples. The levels of many identified metabolites showed gradual or drastic increases or decreases depending on the severity of the stresses involved. The statistical analysis produced a holistic outline: pH stresses were clustered together, but salt stresses were spread out depending on the severity. This work could provide a link between the metabolite profiles and mRNA or protein profiles under representative and well studied stress conditions.

Entities:  

Keywords:  Metabolite profiling; NMR; Stress; Yeast

Year:  2013        PMID: 25642011      PMCID: PMC4311725          DOI: 10.5012/bkcs.2013.34.12.3602

Source DB:  PubMed          Journal:  Bull Korean Chem Soc        ISSN: 0253-2964


  33 in total

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Journal:  In Silico Biol       Date:  2008

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 5.  Bread, beer and wine: yeast domestication in the Saccharomyces sensu stricto complex.

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Journal:  C R Biol       Date:  2011-02-01       Impact factor: 1.583

Review 6.  Metals, toxicity and oxidative stress.

Authors:  M Valko; H Morris; M T D Cronin
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

7.  Stress-activated genomic expression changes serve a preparative role for impending stress in yeast.

Authors:  David B Berry; Audrey P Gasch
Journal:  Mol Biol Cell       Date:  2008-08-27       Impact factor: 4.138

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Authors:  Timothy Jewison; Craig Knox; Vanessa Neveu; Yannick Djoumbou; An Chi Guo; Jacqueline Lee; Philip Liu; Rupasri Mandal; Ram Krishnamurthy; Igor Sinelnikov; Michael Wilson; David S Wishart
Journal:  Nucleic Acids Res       Date:  2011-11-07       Impact factor: 16.971

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Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

10.  Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum.

Authors:  Magda Faijes; Astrid E Mars; Eddy J Smid
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  2 in total

1.  Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy.

Authors:  Young Kee Chae; Seol Hyun Kim; John L Markley
Journal:  PLoS One       Date:  2017-05-09       Impact factor: 3.240

2.  Global Metabolic Responses to Salt Stress in Fifteen Species.

Authors:  Daniel C Sévin; Jacqueline N Stählin; Georg R Pollak; Andreas Kuehne; Uwe Sauer
Journal:  PLoS One       Date:  2016-02-05       Impact factor: 3.240

  2 in total

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