Literature DB >> 25635454

Noise facilitates transcriptional control under dynamic inputs.

Ryan A Kellogg1, Savaş Tay2.   

Abstract

Cells must respond sensitively to time-varying inputs in complex signaling environments. To understand how signaling networks process dynamic inputs into gene expression outputs and the role of noise in cellular information processing, we studied the immune pathway NF-κB under periodic cytokine inputs using microfluidic single-cell measurements and stochastic modeling. We find that NF-κB dynamics in fibroblasts synchronize with oscillating TNF signal and become entrained, leading to significantly increased NF-κB oscillation amplitude and mRNA output compared to non-entrained response. Simulations show that intrinsic biochemical noise in individual cells improves NF-κB oscillation and entrainment, whereas cell-to-cell variability in NF-κB natural frequency creates population robustness, together enabling entrainment over a wider range of dynamic inputs. This wide range is confirmed by experiments where entrained cells were measured under all input periods. These results indicate that synergy between oscillation and noise allows cells to achieve efficient gene expression in dynamically changing signaling environments.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25635454     DOI: 10.1016/j.cell.2015.01.013

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  81 in total

Review 1.  Signal Transduction at the Single-Cell Level: Approaches to Study the Dynamic Nature of Signaling Networks.

Authors:  L Naomi Handly; Jason Yao; Roy Wollman
Journal:  J Mol Biol       Date:  2016-07-16       Impact factor: 5.469

2.  MAPT (Tau) expression is a biomarker for an increased rate of survival in pediatric neuroblastoma.

Authors:  Saif Zaman; Boris I Chobrutskiy; George Blanck
Journal:  Cell Cycle       Date:  2018-11-18       Impact factor: 4.534

3.  Encoding Growth Factor Identity in the Temporal Dynamics of FOXO3 under the Combinatorial Control of ERK and AKT Kinases.

Authors:  Somponnat Sampattavanich; Bernhard Steiert; Bernhard A Kramer; Benjamin M Gyori; John G Albeck; Peter K Sorger
Journal:  Cell Syst       Date:  2018-06-06       Impact factor: 10.304

4.  NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop.

Authors:  Mialy M DeFelice; Helen R Clark; Jacob J Hughey; Inbal Maayan; Takamasa Kudo; Miriam V Gutschow; Markus W Covert; Sergi Regot
Journal:  Sci Signal       Date:  2019-04-30       Impact factor: 8.192

5.  Measurement of NF-κB Activation in TLR-Activated Macrophages.

Authors:  Orna Ernst; Sharat J Vayttaden; Iain D C Fraser
Journal:  Methods Mol Biol       Date:  2018

6.  Communication shapes sensory response in multicellular networks.

Authors:  Garrett D Potter; Tommy A Byrd; Andrew Mugler; Bo Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-29       Impact factor: 11.205

7.  An Optogenetic Method to Control and Analyze Gene Expression Patterns in Cell-to-cell Interactions.

Authors:  Akihiro Isomura; Ryoichiro Kageyama
Journal:  J Vis Exp       Date:  2018-03-22       Impact factor: 1.355

8.  Stochastic dynamics of genetic broadcasting networks.

Authors:  Davit A Potoyan; Peter G Wolynes
Journal:  Phys Rev E       Date:  2017-11-03       Impact factor: 2.529

Review 9.  Determining the Limitations and Benefits of Noise in Gene Regulation and Signal Transduction through Single Cell, Microscopy-Based Analysis.

Authors:  Marie D Harton; Eric Batchelor
Journal:  J Mol Biol       Date:  2017-03-11       Impact factor: 5.469

10.  Integrative analysis suggests cell type-specific decoding of NF-κB dynamics.

Authors:  Erik W Martin; Alicja Pacholewska; Heta Patel; Himanshu Dashora; Myong-Hee Sung
Journal:  Sci Signal       Date:  2020-02-25       Impact factor: 8.192

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.