Literature DB >> 25635229

Noncoding RNAs and DNA Methylation in Plants.

Yuanyuan Zhao1, Xuemei Chen2.   

Abstract

Cytosine DNA methylation is an epigenetic modification in eukaryotes that maintains genome integrity and regulates gene expression. The DNA methylation patterns in plants are more complex than those in animals, and plants and animals have common as well as distinct pathways in regulating DNA methylation. Recent studies involving genetic, molecular, biochemical and genomic approaches have greatly expanded our knowledge of DNA methylation in plants. The roles of many proteins as well as non-coding RNAs in DNA methylation have been uncovered.

Entities:  

Keywords:  DNA methylation; Pol IV; Pol V; argonaute; non-coding RNA; siRNA

Year:  2014        PMID： 25635229      PMCID： PMC4307843          DOI： 10.1093/nsr/nwu003

Source DB:  PubMed          Journal:  Natl Sci Rev        ISSN： 2053-714X            Impact factor:   17.275


  96 in total

1.  Atypical RNA polymerase subunits required for RNA-directed DNA methylation.

Authors:  Tatsuo Kanno; Bruno Huettel; M Florian Mette; Werner Aufsatz; Estelle Jaligot; Lucia Daxinger; David P Kreil; Marjori Matzke; Antonius J M Matzke
Journal:  Nat Genet       Date:  2005-05-29       Impact factor: 38.330

2.  Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

Authors:  Toshiaki Watanabe; Shin-ichi Tomizawa; Kohzoh Mitsuya; Yasushi Totoki; Yasuhiro Yamamoto; Satomi Kuramochi-Miyagawa; Naoko Iida; Yuko Hoki; Patrick J Murphy; Atsushi Toyoda; Kengo Gotoh; Hitoshi Hiura; Takahiro Arima; Asao Fujiyama; Takashi Sado; Tatsuhiro Shibata; Toru Nakano; Haifan Lin; Kenji Ichiyanagi; Paul D Soloway; Hiroyuki Sasaki
Journal:  Science       Date:  2011-05-13       Impact factor: 47.728

3.  The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.

Authors:  Olga Pontes; Carey Fei Li; Pedro Costa Nunes; Jeremy Haag; Thomas Ream; Alexa Vitins; Steven E Jacobsen; Craig S Pikaard
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

4.  Transgenerational epigenetic instability is a source of novel methylation variants.

Authors:  Robert J Schmitz; Matthew D Schultz; Mathew G Lewsey; Ronan C O'Malley; Mark A Urich; Ondrej Libiger; Nicholas J Schork; Joseph R Ecker
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

5.  Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA.

Authors:  Qin Yao; Chun-Xiao Song; Chuan He; Desigan Kumaran; John J Dunn
Journal:  Protein Expr Purif       Date:  2012-03-20       Impact factor: 1.650

6.  The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Authors:  María Isabel Martínez-Macías; Dolores Córdoba-Cañero; Rafael R Ariza; Teresa Roldán-Arjona
Journal:  J Biol Chem       Date:  2013-01-11       Impact factor: 5.157

7.  Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Authors:  Hidetoshi Saze; Akiko Shiraishi; Asuka Miura; Tetsuji Kakutani
Journal:  Science       Date:  2008-01-25       Impact factor: 47.728

8.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

9.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

10.  SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.

Authors:  Lianna M Johnson; Jiamu Du; Christopher J Hale; Sylvain Bischof; Suhua Feng; Ramakrishna K Chodavarapu; Xuehua Zhong; Giuseppe Marson; Matteo Pellegrini; David J Segal; Dinshaw J Patel; Steven E Jacobsen
Journal:  Nature       Date:  2014-01-22       Impact factor: 49.962
View more
  7 in total

1.  DNA methylation repels targeting of Arabidopsis REF6.

Authors:  Qi Qiu; Hailiang Mei; Xian Deng; Kaixuan He; Baixing Wu; Qingqing Yao; Jixiang Zhang; Falong Lu; Jinbiao Ma; Xiaofeng Cao
Journal:  Nat Commun       Date:  2019-05-02       Impact factor: 14.919

2.  Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping.

Authors:  Tslil Gabrieli; Yael Michaeli; Sigal Avraham; Dmitry Torchinsky; Sapir Margalit; Leonie Schütz; Matyas Juhasz; Ceyda Coruh; Nissim Arbib; Zhaohui Sunny Zhou; Julie A Law; Elmar Weinhold; Yuval Ebenstein
Journal:  Nucleic Acids Res       Date:  2022-09-09       Impact factor: 19.160

Review 3.  Regulation of mammalian transcription and splicing by Nuclear RNAi.

Authors:  Roya Kalantari; Cheng-Ming Chiang; David R Corey
Journal:  Nucleic Acids Res       Date:  2015-11-26       Impact factor: 16.971

4.  Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis.

Authors:  Mónica I Fass; Máximo Rivarola; Norma B Paniego; Verónica V Lia; Guillermo F Ehrenbolger; Carla A Maringolo; Juan F Montecchia; Facundo Quiroz; Francisco García-García; Joaquín Dopazo Blázquez; H Esteban Hopp; Ruth A Heinz
Journal:  Sci Rep       Date:  2020-08-07       Impact factor: 4.379

Review 5.  Mechanisms of microRNA-mediated gene regulation in unicellular model alga Chlamydomonas reinhardtii.

Authors:  Sulin Lou; Ting Sun; Hui Li; Zhangli Hu
Journal:  Biotechnol Biofuels       Date:  2018-09-08       Impact factor: 6.040

6.  Plant Regulomics Portal (PRP): a comprehensive integrated regulatory information and analysis portal for plant genomes.

Authors:  Ganesh Panzade; Indu Gangwar; Supriya Awasthi; Nitesh Sharma; Ravi Shankar
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

Review 7.  In Response to Abiotic Stress, DNA Methylation Confers EpiGenetic Changes in Plants.

Authors:  Zahida Akhter; Zhenzhen Bi; Kazim Ali; Chao Sun; Sajid Fiaz; Fasih Ullah Haider; Jiangping Bai
Journal:  Plants (Basel)       Date:  2021-05-30
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.