Literature DB >> 25628219

A novel transposable Mu-like prophage in Bacillus alcalophilus CGMCC 1.3604 (ATCC 27647).

Junjie Yang1, Yimeng Kong, Xuan Li, Sheng Yang.   

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Year:  2015        PMID： 25628219      PMCID： PMC8200866          DOI： 10.1007/s12250-014-3497-8

Source DB:  PubMed          Journal:  Virol Sin        ISSN： 1995-820X            Impact factor:   4.327


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  15 in total

1.  Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.

Authors:  J Gough; K Karplus; R Hughey; C Chothia
Journal:  J Mol Biol       Date:  2001-11-02       Impact factor: 5.469

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Transposable Mu-like phages in Firmicutes: new instances of divergence generating retroelements.

Authors:  Ariane Toussaint
Journal:  Res Microbiol       Date:  2013-02-04       Impact factor: 3.992

4.  Tablet--next generation sequence assembly visualization.

Authors:  Iain Milne; Micha Bayer; Linda Cardle; Paul Shaw; Gordon Stephen; Frank Wright; David Marshall
Journal:  Bioinformatics       Date:  2009-12-04       Impact factor: 6.937

5.  Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa.

Authors:  Michael D Braid; Jennifer L Silhavy; Christopher L Kitts; Raul J Cano; Martha M Howe
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

6.  Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112.

Authors:  Pauline W Wang; Linda Chu; David S Guttman
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

7.  ACLAME: a CLAssification of Mobile genetic Elements, update 2010.

Authors:  Raphaël Leplae; Gipsi Lima-Mendez; Ariane Toussaint
Journal:  Nucleic Acids Res       Date:  2009-11-23       Impact factor: 16.971

8.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

9.  Transposable prophage Mu is organized as a stable chromosomal domain of E. coli.

Authors:  Rudra P Saha; Zheng Lou; Luke Meng; Rasika M Harshey
Journal:  PLoS Genet       Date:  2013-11-07       Impact factor: 5.917

10.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Authors:  Ross Overbeek; Robert Olson; Gordon D Pusch; Gary J Olsen; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Bruce Parrello; Maulik Shukla; Veronika Vonstein; Alice R Wattam; Fangfang Xia; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971
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  1 in total

1.  Bacteriophages, revitalized after 100 years in the shadow of antibiotics.

Authors:  Hongping Wei
Journal:  Virol Sin       Date:  2015-02       Impact factor: 4.327
  1 in total

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