| Literature DB >> 25621134 |
Yuan Li1, Qun Hong Wu1, Ming Li Jiao1, Xiao Hong Fan1, Quan Hu2, Yan Hua Hao1, Ruo Hong Liu3, Wei Zhang4, Yu Cui1, Li Yuan Han5.
Abstract
AIMS/Entities:
Keywords: Adiponectin; Diabetic retinopathy; Gene–environment interaction
Year: 2014 PMID: 25621134 PMCID: PMC4296704 DOI: 10.1111/jdi.12249
Source DB: PubMed Journal: J Diabetes Investig ISSN: 2040-1116 Impact factor: 4.232
Oligonucleotide sequence used for genotyping
| SNP | Primer | Sequence |
|---|---|---|
| C-11377G | 1st PCR | 5′-ACGTTGGATGATGTGTGGCTTGCAAGAACC-3′ |
| 2nd PCR | 5′-ACGTTGGATGTTGGACTTTCTTGGCACGCT-3′ | |
| Extension primer | 5′-ACGCTCATGTTTTGTTTTTGAAG-3′ | |
| A-4034C | 1st PCR | 5′-ACGTTGGATGATCAGAGTCCGTTCTTGGTC-3′ |
| 2nd PCR | 5′-ACGTTGGATGGGTAGAGGTGCCAAAAATAC-3′ | |
| Extension primer | 5′-GTGCCAAAAATACAAGAGTG-3′ | |
| T45G | 1st PCR | 5′-ACGTTGGATGAGGGCTCAGGATGCTGTTG-3′ |
| 2nd PCR | 5′-ACGTTGGATGCCTTGAGTCGTGGTTTCCTG-3′ | |
| Extension primer | 5′-TTGAGTCGTGGTTTCCTGGTCATG-3′ | |
| G276T | 1st PCR | 5′-ACGTTGGATGCTTTCTCCCTGTGTCTAGGC-3′ |
| 2nd PCR | 5′-ACGTTGGATGCTCTTTCATCACAGACCTCC-3′ | |
| Extension primer | 5′-CCTACACTGATATAAACTATATGAAG-3′ |
PCR, polymerase chain reaction; SNP, single-nucleotide polymerase chain reaction.
Demographic information and socioeconomic status of cases and controls
| Cases | Controls | ||
|---|---|---|---|
| 372 | 145 | ||
| Age (mean ± SD) | 63.39 ± 10.60 | 62.34 ± 10.75 | 0.31 |
| Sex (male/female) | 146/226 | 49/96 | 0.25 |
| Education level | 0.95 | ||
| Less than primary and primary (%) | 209 (56%) | 84 (57.9%) | |
| Junior and senior middle (%) | 110 (29.5%) | 42 (28.9%) | |
| Junior college (%) | 36 (9.8%) | 12 (8.2%) | |
| College and above (%) | 17 (4.7%) | 7 (5%) | |
| Income group ¥ | 0.73 | ||
| <1000 (%) | 85 (22.8%) | 38 (26.2%) | |
| 1000–2999 (%) | 242 (65.1%) | 92 (63.4%) | |
| 2999–5999 (%) | 39 (10.4%) | 14 (9.7%) | |
| ≥6000 (%) | 6 (1.7%) | 1 (0.7%) | |
| Marital status | 0.84 | ||
| Single (%) | 6 (1.6%) | 1 (0.7%) | |
| Married (%) | 322 (86.6%) | 125 (86.2%) | |
| Widowed (%) | 2 (0.6%) | 1 (0.7%) | |
| Divorce (%) | 42 (11.2%) | 18 (12.4%) | |
| BMI (kg/m2) | 24.48 ± 3.45 | 24.22 ± 3.36 | 0.43 |
| WHR | 0.92 ± 0.14 | 0.91 ± 0.09 | 0.42 |
| SBP (mmHg) | 133.85 ± 16.48 | 133.18 ± 15.78 | 0.67 |
| DBP (mmHg) | 80.62 ± 10.46 | 79.97 ± 9.53 | 0.51 |
| TC (mmol/L) | 5.49 ± 1.02 | 5.45 ± 1.01 | 0.68 |
| TG (mmol/L) | 2.21 ± 1.27 | 2.17 ± 1.13 | 0.74 |
| HDL-C (mmol/L) | 1.30 ± 0.31 | 1.31 ± 0.32 | 0.74 |
| LDL-C (mmol/L) | 2.81 ± 0.46 | 2.90 ± 0.44 | 0.04 |
| FBG (%) | 8.47 ± 3.43 | 7.58 ± 3.68 | 0.009 |
| 2hPG (%) | 13.01 ± 4.36 | 11.98 ± 4.22 | 0.01 |
| HbA1C,% (mmol/mol) | 9.43 (80) ± 2.33 | 8.98 (71) ± 2.55 | 0.055 |
| Duration of diabetes | 14.27 ± 4.21 | 14.46 ± 5.01 | 0.66 |
Significant results. Numbers are given as n (%). 2hPG, 2-h plasma glucose; BMI, body mass index; DBP, diastolic blood pressure; FBG, fasting blood glucose; HbA1c, glycated hemoglobin; HDL-C, high-density lipoprotein cholesterol; LDL-C, low-density lipoprotein cholesterol; SBP, systolic blood pressure; SD, standard deviation; TC, total cholesterol; TG, triglyceride; WHR, waist-to-hip ratio.
Genotype and allele distribution of adiponectin gene polymorphisms in type 2 diabetes with and without retinopathy
| Model | Genotype | Cases (%) | Control (%) | OR (95% CI) | |
|---|---|---|---|---|---|
| C-11377G (rs266729) | |||||
| Codominant | C/C | 190 (51.1) | 67 (46.2) | 1.00 (Referent) | – |
| C/G | 148 (39.8) | 60 (41.4) | 1.15 (0.76–1.73) | 0.43 | |
| G/G | 34 (9.1) | 18 (12.4) | 1.30 (0.68–2.49) | ||
| Dominant | C/C | 190 (51.1) | 67 (46.2) | 1.00 (Referent) | |
| C/G-G/G | 182 (48.9) | 78 (53.8) | 1.21 (0.82–1.78) | 0.37 | |
| Recessive | C/C-C/G | 338 (90.9) | 127 (87.6) | 1.00 (Referent) | |
| G/G | 34 (9.1) | 18 (12.4) | 1.40 (0.76–2.58) | 0.34 | |
| A-4034C (rs822394) | |||||
| Codominant | C/C | 288 (77.4) | 112 (77.2) | 1.00 (Referent) | – |
| A/C | 80 (21.5) | 31 (21.4) | 0.99 (0.62–1.59) | 0.95 | |
| A/A | 4 (1.1) | 2 (1.4) | 1.29 (0.22–7.40) | ||
| Dominant | C/C | 288 (77.4) | 112 (77.2) | 1.00 (Referent) | – |
| A/C-A/A | 84 (22.6) | 33 (22.8) | 1.01 (0.63–1.59) | 0.96 | |
| Recessive | C/C-A/C | 368 (98.9) | 143 (98.6) | 1.00 (Referent) | – |
| A/A | 4 (1.1) | 2 (1.4) | 1.28 (0.23–7.10) | 0.77 | |
| T45G (rs2241766) | |||||
| Codominant | T/T | 206 (55.5) | 82 (56.6) | 1.00 (Referent) | – |
| T/G | 140 (37.7) | 53 (36.6) | 0.95 (0.63–1.42) | 0.96 | |
| G/G | 25 (6.7) | 10 (6.8) | 1.05 (0.47–2.34) | ||
| Dominant | T/T | 206 (55.5) | 82 (56.6) | 1.00 (Referent) | – |
| T/G-G/G | 165 (44.5) | 63 (43.4) | 0.95 (0.65–1.41) | 0.91 | |
| Recessive | T/T-T/G | 346 (93.3) | 135 (93.2) | 1.00 (Referent) | – |
| G/G | 25 (6.7) | 10 (6.8) | 1.02 (0.48–2.19) | 0.94 | |
| G276T (rs1501299) | |||||
| Codominant | G/G | 164 (44.1) | 82 (56.5) | 1.00 (Referent) | – |
| G/T | 169 (45.4) | 55 (38) | 0.65 (0.43–0.97) | 0.02 | |
| T/T | 39 (10.5) | 8 (5.5) | 0.63 (0.27–1.43) | ||
| Dominant | G/G | 164 (44.1) | 82 (56.5) | 1.00 (Referent) | – |
| G/T-T/T | 208 (55.9) | 63 (43.5) | 0.60 (0.41–0. 89) | 0.01 | |
| Recessive | G/G-G/T | 333 (89.5) | 137 (94.5) | 1.00 (Referent) | – |
| T/T | 39 (10.5) | 8 (5.5) | 0.49 (0.22–1.09) | 0.11 | |
Genotype distributions are shown as n (%). Odds ratios (OR), 95% confidence intervals (CI), and P-values were from logistic regression analyses with codominant, dominant, recessive model controlling for family history of diabetes, insulin therapy and physical activity.
Main effects of environment-related factors on diabetic retinopathy by univariate logistic regression
| Cases (%) | Controls (%) | OR (95% CI) | ||
|---|---|---|---|---|
| Smoking status | ||||
| Never | 301 (80.8) | 120 (82.6) | 1.000 (Referent) | – |
| Past | 23 (6.2) | 6 (4.2) | 0.65 (0.26–1.64) | 0.48 |
| Current | 48 (13.0) | 19 (13.2) | 1.51 (0.53–4.30) | 0.59 |
| Daily amount of smoking (Cigarettes/day) | ||||
| <5 | 37 (10.0) | 21 (14.5) | 1.000 (Referent) | – |
| 5–9 | 89 (24.0) | 34 (23.5) | 0.67 (0.34–1.30) | 0.31 |
| 10–19 | 111 (30.0) | 46 (31.7) | 1.08 (0.64–1.83) | 0.86 |
| ≥20 | 134 (36.0) | 44 (30.3) | 0.79 (0.48–1.28) | 0.41 |
| Pack years of smoking | ||||
| <20 | 133 (35.6) | 52 (35.7) | 1.000 (Referent) | – |
| 20–30 | 122 (32.8) | 42 (29) | 0.88 (0.54–1.41) | 0.68 |
| 30–40 | 82 (22.1) | 28 (19.3) | 0.99 (0.57–1.72) | 0.97 |
| ≥40 | 35 (9.5) | 23 (16) | 1.92 (0.97–3.79) | 0.08 |
| Ethanol intake (g/day) | ||||
| No intake | 346 (93.0) | 136 (93.8) | 1.000 (Referent) | – |
| <13 (g/day) | 8 (2.2) | 2 (1.4) | 0.63 (0.13–3.03) | 0.82 |
| 13–26 (g/day) | 6 (1.6) | 2 (1.4) | 1.33 (0.14–12.36) | 0.80 |
| 26–88 (g/day) | 6 (1.6) | 3 (2) | 1.50 (0.18–12.45) | 0.70 |
| ≥88 (g/day) | 6 (1.6) | 2 (1.4) | 0.66 (0.08–5.53) | 0.70 |
| Physical activity | ||||
| No exercise | 107 (28.8) | 58 (40) | 1.000 (Referent) | – |
| Light-intensity | 193 (51.9) | 75 (51.7) | 0.71 (0.47–1.08) | 0.14 |
| Moderate-intensity | 68 (18.3) | 11 (7.6) | 0.41 (0.20–0.83) | 0.01 |
| Vigorous-intensity | 4 (1.0) | 1 (0.7) | 1.54 (0.15–15.14) | 0.70 |
| Insulin therapy | ||||
| No | 198 (53.2) | 50 (34.5) | 1.000 (Referent) | |
| Yes | 174 (46.8) | 95 (65.5) | 2.16 (1.45–3.22) | 0.0001 |
| Family history of diabetes | ||||
| No | 304 (81.7) | 98 (67.6) | 1.000 (Referent) | – |
| Yes | 68 (18.3) | 47 (32.4) | 2.14 (1.38–3.31) | 0.001 |
| History of hypertension | ||||
| No | 249 (67) | 86 (59.3) | 1.000 (Referent) | – |
| Yes | 123 (33) | 59 (40.7) | 1.83 (1.24–2.71) | 0.003 |
| Income pressure | ||||
| Never | 284 (76.3) | 111 (76.6) | 1.000 (Referent) | – |
| Occasional | 62 (16.7) | 26 (17.9) | 1.07 (0.64–1.78) | 0.88 |
| Daily | 26 (7.0) | 8 (5.5) | 0.73 (0.29–1.83) | 0.66 |
| Family stress | ||||
| Never | 264 (71) | 109 (75.2) | 1.000 (Referent) | – |
| Occasional | 77 (20.7) | 19 (13.1) | 0.59 (0.34–1.03) | 0.08 |
| Daily | 31 (8.3) | 17 (11.7) | 2.22 (1.02–4.82) | 0.04 |
| BMI (kg/m2) | ||||
| <24 (%) | 169 (45.3) | 62 (42.8) | 1.000 (Referent) | – |
| 24–28 (%) | 152 (40.9) | 62 (42.8) | 1.11 (0.73–1.68) | 0.69 |
| >28 kg/m2 (%) | 51 (13.8) | 21 (14.4) | 1.01 (0.56–1.81) | 0.97 |
Significant results in univariate logistic regression after adjusting for low-density lipoprotein cholesterol, fasting plasma glucose and 2-h plasma glucose.
Multivariate logistic regression analysis of environment factors
| β | SE | Wald χ2 | OR (95% CI) | ||
|---|---|---|---|---|---|
| Physical activity | |||||
| No exercise | 1.000 (Referent) | – | |||
| Light-intensity | 0.26 | 0.15 | 1.11 | 1.28 (0.72–1.81) | 0.25 |
| Moderate-intensity | –0.37 | 0.11 | 6.05 | 0.57 (0.37–0.89) | 0.01 |
| Vigorous-intensity | 0.07 | 0.12 | 0.25 | 1.42 (0.41–3.56) | 0.98 |
| Insulin therapy | |||||
| No | 1.000 (Referent) | – | |||
| Yes | 0.62 | 0.15 | 16.01 | 1.78 (1.38–2.36) | 0.001 |
| Family history of diabetes | |||||
| No | 1.000 (referent) | – | |||
| Yes | 1.12 | 0.18 | 25.8 | 1.75 (1.43–2.69) | 0.001 |
Significant results in multivariable logistic regression. CI, confidence interval; OR, odds ratio.
Comparison of serum adiponectin levels of different genotypes
| SNPs | 1/1 | 1/2 | 2/2 | |
|---|---|---|---|---|
| −11377C>G (rs266729) | 7.95 ± 5.42 | 7.97 ± 5.61 | 7.73 ± 6.27 | 0.94 |
| A-4034C (rs822394) | 8.66 ± 4.91 | 7.96 ± 5.01 | 7.91 ± 5.75 | 0.90 |
| +45T>G (rs2241766) | 7.98 ± 7.95 | 8.37 ± 5.16 | 7.69 ± 5.46 | 0.35 |
| +276G>T (rs1501299) | 7.79 ± 5.77 | 7.84 ± 5.25 | 8.03 ± 5.84 | 0.89 |
Wild-type homozygote/bheterozygote/cvariant homozygote. SNPs, single-nucleotide polymorphisms.
Summary of results for diabetic retinopathy risk prediction from multifactor dimensionality reduction analysis
| Model | Training balance accuracy | Testing balance accuracy | Cross validation consistency | OR (95% CI) | |
|---|---|---|---|---|---|
| Loci–loci interaction model | |||||
| +276G>T | 0.58 | 0.56 | 10/10 | 0.82 (0.61–1.08) | 0.12 |
| –11377C>G, +276G>T | 0.55 | 0.51 | 6/10 | 0.95 (0.39–2.12) | 0.89 |
| −11377C>G, A -4034C, +276G>T | 0.56 | 0.53 | 9/10 | 1.70 (0.74–3.67) | 0.17 |
| –11377C>G, A -4034C, +45T>G, +276G>T | 0.57 | 0.49 | 10/10 | 0.96 (0.39–2.12) | 0.92 |
| Environment–environment interaction model | |||||
| Family history of diabetes | 0.63 | 0.64 | 10/10 | 2.82 (2.29–3.53 | 0.001 |
| Family history of diabetes, insulin therapy | 0.65 | 0.68 | 10/10 | 3.29 (2.34–4.26) | 0.001 |
| Duration of diabetes, family history of diabetes, insulin therapy | 0.65 | 0.65 | 8/10 | 2.89 (2.12–4.52) | 0.001 |
| Gene–environment interaction model | |||||
| Insulin therapy | 0.63 | 0.63 | 10/10 | 2.01 (1.71–3.12) | 0.0001 |
| C-11377G (rs266729), insulin therapy | 0.64 | 0.65 | 10/10 | 2.53 (1.91–3.31) | <0.0001 |
| Family stress, history of hypertension, insulin therapy | 0.65 | 0.62 | 7/10 | 1.95 (0.85–4.43) | 0.1 |
| G276T (rs1501299), family stress, family history of diabetes, insulin therapy | 0.67 | 0.62 | 6/10 | 2.13 (1.05–5.12) | 0.05 |
The best model is the one with the maximum cross-validation consistency and maximum testing balance accuracy. CI, confidence interval; OR, odds ratio.
Figure 1(a) The identified best model in gene–environment interaction. Distribution of high-risk (dark shading) and low-risk (light shading) combinations associated with diabetic retinopathy (DR) in a gene–environment model. High-risk factors are in the dark gray and low-risk factors are in the light gray. The number of DR patients (left bar in boxes) and control subjects (right bar in boxes) are shown for each square array. A1: insulin therapy, 0 for not taking insulin therapy, 1 for taking insulin therapy; A2: C-11377G (rs266729), 0 for CC genotype, 1 for CG genotype and 2 for GG genotype. (b) The identified best model in environment–environment interaction. High-risk factors are in the dark gray and low-risk factors are in the light gray. The number of DR patients (left bar in boxes) and control subjects (right bar in boxes) are shown for each square array. B1: insulin therapy, 0 for not taking insulin therapy, 1 for taking insulin therapy; B2: family history of diabetes, 0 for not with family history of diabetes, 1 for with family history of diabetes.