Alissa A Thomas1, Jan L Fisher1, Gilbert J Rahme1, Thomas H Hampton1, Udo Baron1, Sven Olek1, Tim Schwachula1, C Harker Rhodes1, Jiang Gui1, Laura J Tafe1, Gregory J Tsongalis1, Joel A Lefferts1, Heather Wishart1, Jonathan Kleen1, Michael Miller1, Chery A Whipple1, Francine B de Abreu1, Marc S Ernstoff1, Camilo E Fadul1. 1. Department of Neurology, Dartmouth Hitchcock Medical Center, Lebanon, New Hampshire (A.A.T.); Department of Medicine, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire (J.L.F.); Department of Genetics, Geisel School of Medicine at Dartmouth, Norris Cotton Cancer Center, Dartmouth College, Lebanon, New Hampshire (G.J.R.); Epiontis GmbH, Berlin, Germany (U.B., S.O., T.S.); Department of Pathology, Dartmouth Hitchcock Medical Center, Lebanon, New Hampshire (C.H.R., L.J.T., G.J.T., J.A.L., F.B.d.A.); Section of Biostatistics and Epidemiology, Department of Family and Community Medicine, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire (J.G.); Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire (T.H.H.); Department of Psychiatry, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire (H.W.); Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire (J.K., M.M.); Department of Medicine, Norris Cotton Cancer Center, Geisel School of Medicine, Dartmouth Hitchcock Medical Center, Lebanon, New Hampshire (C.A.W.); Melanoma Program, Taussig Cancer Institute, Cleveland Clinic Foundation, Cleveland, Ohio (M.S.E.); Department of Medicine, Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth, Dartmouth Hitchcock Medical Center, Lebanon, New Hampshire (C.E.F.).
Abstract
BACKGROUND: Regulatory T cells (Tregs) are potentially prognostic indicators in patients with glioblastoma. If differences in frequency of Tregs in tumor or blood account for substantial variation in patient survival, then reliably measuring Tregs may enhance treatment selection and improve outcomes. METHODS: We measured Tregs and CD3+ T cells in tumors and blood from 25 patients with newly diagnosed glioblastoma. Tumor-infiltrating Tregs and CD3+ T cells, measured by quantitative DNA demethylation analysis (epigenetic qPCR) and by immunohistochemistry, and peripheral blood Treg proportions measured by flow cytometry were correlated with patient survival. Additionally, we analyzed data from The Cancer Genome Atlas (TCGA) to correlate the expression of Treg markers with patient survival and glioblastoma subtypes. RESULTS: Tregs, as measured in tumor tissue and peripheral blood, did not correlate with patient survival. Although there was a correlation between tumor-infiltrating Tregs expression by epigenetic qPCR and immunohistochemistry, epigenetic qPCR was more sensitive and specific. Using data from TCGA, mRNA expression of Forkhead box protein 3 (FoxP3) and Helios and FoxP3 methylation level did not predict survival. While the classical glioblastoma subtype corresponded to lower expression of Treg markers, these markers did not predict survival in any of the glioblastoma subtypes. CONCLUSIONS: Although immunosuppression is a hallmark of glioblastoma, Tregs as measured in tissue by gene expression, immunohistochemistry, or demethylation and Tregs in peripheral blood measured by flow cytometry do not predict survival of patients. Quantitative DNA demethylation analysis provides an objective, sensitive, and specific way of identifying Tregs and CD3+ T cells in glioblastoma.
BACKGROUND: Regulatory T cells (Tregs) are potentially prognostic indicators in patients with glioblastoma. If differences in frequency of Tregs in tumor or blood account for substantial variation in patient survival, then reliably measuring Tregs may enhance treatment selection and improve outcomes. METHODS: We measured Tregs and CD3+ T cells in tumors and blood from 25 patients with newly diagnosed glioblastoma. Tumor-infiltrating Tregs and CD3+ T cells, measured by quantitative DNA demethylation analysis (epigenetic qPCR) and by immunohistochemistry, and peripheral blood Treg proportions measured by flow cytometry were correlated with patient survival. Additionally, we analyzed data from The Cancer Genome Atlas (TCGA) to correlate the expression of Treg markers with patient survival and glioblastoma subtypes. RESULTS: Tregs, as measured in tumor tissue and peripheral blood, did not correlate with patient survival. Although there was a correlation between tumor-infiltrating Tregs expression by epigenetic qPCR and immunohistochemistry, epigenetic qPCR was more sensitive and specific. Using data from TCGA, mRNA expression of Forkhead box protein 3 (FoxP3) and Helios and FoxP3 methylation level did not predict survival. While the classical glioblastoma subtype corresponded to lower expression of Treg markers, these markers did not predict survival in any of the glioblastoma subtypes. CONCLUSIONS: Although immunosuppression is a hallmark of glioblastoma, Tregs as measured in tissue by gene expression, immunohistochemistry, or demethylation and Tregs in peripheral blood measured by flow cytometry do not predict survival of patients. Quantitative DNA demethylation analysis provides an objective, sensitive, and specific way of identifying Tregs and CD3+ T cells in glioblastoma.
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