Literature DB >> 25616385

Role of solvent properties of aqueous media in macromolecular crowding effects.

Luisa A Ferreira1, Pedro P Madeira2, Leonid Breydo3, Christian Reichardt4, Vladimir N Uversky2,5,6,7, Boris Y Zaslavsky1.   

Abstract

Analysis of the macromolecular crowding effects in polymer solutions show that the excluded volume effect is not the only factor affecting the behavior of biomolecules in a crowded environment. The observed inconsistencies are commonly explained by the so-called soft interactions, such as electrostatic, hydrophobic, and van der Waals interactions, between the crowding agent and the protein, in addition to the hard nonspecific steric interactions. We suggest that the changes in the solvent properties of aqueous media induced by the crowding agents may be the root of these "soft" interactions. To check this hypothesis, the solvatochromic comparison method was used to determine the solvent dipolarity/polarizability, hydrogen-bond donor acidity, and hydrogen-bond acceptor basicity of aqueous solutions of different polymers (dextran, poly(ethylene glycol), Ficoll, Ucon, and polyvinylpyrrolidone) with the polymer concentration up to 40% typically used as crowding agents. Polymer-induced changes in these features were found to be polymer type and concentration specific, and, in case of polyethylene glycol (PEG), molecular mass specific. Similarly sized polymers PEG and Ucon producing different changes in the solvent properties of water in their solutions induced morphologically different α-synuclein aggregates. It is shown that the crowding effects of some polymers on protein refolding and stability reported in the literature can be quantitatively described in terms of the established solvent features of the media in these polymers solutions. These results indicate that the crowding agents do induce changes in solvent properties of aqueous media in crowded environment. Therefore, these changes should be taken into account for crowding effect analysis.

Entities:  

Keywords:  aqueous two-phase system; macromolecular crowding; partition; solvatochromic comparison; solvent properties

Mesh:

Substances:

Year:  2015        PMID: 25616385     DOI: 10.1080/07391102.2015.1011235

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  12 in total

1.  Effect of an Intrinsically Disordered Plant Stress Protein on the Properties of Water.

Authors:  Luisa A Ferreira; Alicyia Walczyk Mooradally; Boris Zaslavsky; Vladimir N Uversky; Steffen P Graether
Journal:  Biophys J       Date:  2018-09-22       Impact factor: 4.033

2.  Crowder-Induced Conformational Ensemble Shift in Escherichia coli Prolyl-tRNA Synthetase.

Authors:  Lauren M Adams; Ryan J Andrews; Quin H Hu; Heidi L Schmit; Sanchita Hati; Sudeep Bhattacharyya
Journal:  Biophys J       Date:  2019-08-31       Impact factor: 4.033

3.  Solvent Properties of Water in Aqueous Solutions of Elastin-Like Polypeptide.

Authors:  Luisa A Ferreira; James T Cole; Christian Reichardt; Nolan B Holland; Vladimir N Uversky; Boris Y Zaslavsky
Journal:  Int J Mol Sci       Date:  2015-06-12       Impact factor: 5.923

4.  Microenvironments created by liquid-liquid phase transition control the dynamic distribution of bacterial division FtsZ protein.

Authors:  Begoña Monterroso; Silvia Zorrilla; Marta Sobrinos-Sanguino; Christine D Keating; Germán Rivas
Journal:  Sci Rep       Date:  2016-10-11       Impact factor: 4.379

5.  Peculiarities of the Super-Folder GFP Folding in a Crowded Milieu.

Authors:  Olesya V Stepanenko; Olga V Stepanenko; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2016-10-28       Impact factor: 5.923

6.  Observed crowding effects on Mycobacterium tuberculosis 2-trans-enoyl-ACP (CoA) reductase enzyme activity are not due to excluded volume only.

Authors:  Mariane Rotta; Luis F S M Timmers; Carlos Sequeiros-Borja; Cristiano V Bizarro; Osmar N de Souza; Diogenes S Santos; Luiz A Basso
Journal:  Sci Rep       Date:  2017-07-28       Impact factor: 4.379

7.  Structure and Conformational Properties of d-Glucose/d-Galactose-Binding Protein in Crowded Milieu.

Authors:  Alexander V Fonin; Sergey A Silonov; Asiya K Sitdikova; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Molecules       Date:  2017-02-06       Impact factor: 4.411

8.  Mechanisms ruling the partition of solutes in ionic-liquid-based aqueous biphasic systems - the multiple effects of ionic liquids.

Authors:  Helena Passos; Teresa B V Dinis; Emanuel V Capela; Maria V Quental; Joana Gomes; Judite Resende; Pedro P Madeira; Mara G Freire; João A P Coutinho
Journal:  Phys Chem Chem Phys       Date:  2018-03-28       Impact factor: 3.676

9.  Crowding Effects on the Structure and Dynamics of the Intrinsically Disordered Nuclear Chromatin Protein NUPR1.

Authors:  Alessio Bonucci; Martina Palomino-Schätzlein; Paula Malo de Molina; Arantxa Arbe; Roberta Pierattelli; Bruno Rizzuti; Juan L Iovanna; José L Neira
Journal:  Front Mol Biosci       Date:  2021-07-05

10.  Hydrogen Bond Arrangement Is Shown to Differ in Coexisting Phases of Aqueous Two-Phase Systems.

Authors:  Pedro P Madeira; Amber R Titus; Luisa A Ferreira; Alexander I Belgovskiy; Elizabeth K Mann; Jay Adin Mann; William V Meyer; Anthony E Smart; Vladimir N Uversky; Boris Y Zaslavsky
Journal:  Biomolecules       Date:  2021-11-30
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