Literature DB >> 25615963

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of the histone-like HU protein from Spiroplasma melliferum KC3.

Konstantin Boyko1, Marina Gorbacheva1, Tatiana Rakitina2, Dmitry Korzhenevskiy2, Anna Vanyushkina3, Dmitry Kamashev3, Alexey Lipkin2, Vladimir Popov1.   

Abstract

HU proteins belong to the nucleoid-associated proteins (NAPs) that are involved in vital processes such as DNA compaction and reparation, gene transcription etc. No data are available on the structures of HU proteins from mycoplasmas. To this end, the HU protein from the parasitic mycoplasma Spiroplasma melliferum KC3 was cloned, overexpressed in Escherichia coli and purified to homogeneity. Prismatic crystals of the protein were obtained by the vapour-diffusion technique at 4°C. The crystals diffracted to 1.36 Å resolution (the best resolution ever obtained for a HU protein). The diffraction data were indexed in space group C2 and the structure of the protein was solved by the molecular-replacement method with one monomer per asymmetric unit.

Entities:  

Keywords:  DNA binding; HU protein; three-dimensional structure

Mesh:

Substances:

Year:  2015        PMID: 25615963      PMCID: PMC4304742          DOI: 10.1107/S2053230X14025333

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  16 in total

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Journal:  Microbiol Rev       Date:  1987-09

2.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

3.  Application of Spiroplasma melliferum proteogenomic profiling for the discovery of virulence factors and pathogenicity mechanisms in host-associated spiroplasmas.

Authors:  Dmitry Alexeev; Elena Kostrjukova; Alexander Aliper; Anna Popenko; Nikolay Bazaleev; Alexander Tyakht; Oksana Selezneva; Tatyana Akopian; Elena Prichodko; Ilya Kondratov; Mikhail Chukin; Irina Demina; Maria Galyamina; Dmitri Kamashev; Anna Vanyushkina; Valentina Ladygina; Sergei Levitskii; Vasily Lazarev; Vadim Govorun
Journal:  J Proteome Res       Date:  2011-12-16       Impact factor: 4.466

4.  The stability of the archaeal HU histone-like DNA-binding protein from Thermoplasma volcanium.

Authors:  Fotini Orfaniotou; Pavlos Tzamalis; Angelos Thanassoulas; Eleni Stefanidi; Athanassios Zees; Effrosini Boutou; Metaxia Vlassi; George Nounesis; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2008-09-26       Impact factor: 2.395

5.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

6.  The Plasmodium HU homolog, which binds the plastid DNA sequence-independent manner, is essential for the parasite's survival.

Authors:  Narie Sasaki; Makoto Hirai; Katsura Maeda; Ryoko Yui; Kie Itoh; Syoko Namiki; Teppei Morita; Masayuki Hata; Kimiko Murakami-Murofushi; Hiroyuki Matsuoka; Kiyoshi Kita; Shigeharu Sato
Journal:  FEBS Lett       Date:  2009-04-07       Impact factor: 4.124

7.  Investigation of the structural basis for thermostability of DNA-binding protein HU from Bacillus stearothermophilus.

Authors:  S Kawamura; Y Abe; T Ueda; K Masumoto; T Imoto; N Yamasaki; M Kimura
Journal:  J Biol Chem       Date:  1998-08-07       Impact factor: 5.157

8.  Evidence of a thermal unfolding dimeric intermediate for the Escherichia coli histone-like HU proteins: thermodynamics and structure.

Authors:  Jean Ramstein; Nadège Hervouet; Franck Coste; Charles Zelwer; Jacques Oberto; Bertrand Castaing
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

9.  HU binds and folds single-stranded DNA.

Authors:  Dmitri Kamashev; Anna Balandina; Alexey K Mazur; Paola B Arimondo; Josette Rouviere-Yaniv
Journal:  Nucleic Acids Res       Date:  2007-12-20       Impact factor: 16.971

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  5 in total

1.  Consensus protein engineering on the thermostable histone-like bacterial protein HUs significantly improves stability and DNA binding affinity.

Authors:  Anastasios Georgoulis; Maria Louka; Stratos Mylonas; Philemon Stavros; George Nounesis; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2020-01-24       Impact factor: 2.395

2.  HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses.

Authors:  Anna C Papageorgiou; Panagiotis S Adam; Philemon Stavros; George Nounesis; Rob Meijers; Kyriacos Petratos; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2016-06-24       Impact factor: 2.395

3.  Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3.

Authors:  Konstantin M Boyko; Tatiana V Rakitina; Dmitry A Korzhenevskiy; Anna V Vlaskina; Yuliya K Agapova; Dmitry E Kamashev; Sergey Y Kleymenov; Vladimir O Popov
Journal:  Sci Rep       Date:  2016-11-03       Impact factor: 4.379

4.  Comparison of histone-like HU protein DNA-binding properties and HU/IHF protein sequence alignment.

Authors:  Dmitri Kamashev; Yulia Agapova; Sergey Rastorguev; Anna A Talyzina; Konstantin M Boyko; Dmitry A Korzhenevskiy; Anna Vlaskina; Raif Vasilov; Vladimir I Timofeev; Tatiana V Rakitina
Journal:  PLoS One       Date:  2017-11-13       Impact factor: 3.240

5.  Structure-based inhibitors targeting the alpha-helical domain of the Spiroplasma melliferum histone-like HU protein.

Authors:  Yuliya K Agapova; Dmitry A Altukhov; Vladimir I Timofeev; Victor S Stroylov; Vitaly S Mityanov; Dmitry A Korzhenevskiy; Anna V Vlaskina; Eugenia V Smirnova; Eduard V Bocharov; Tatiana V Rakitina
Journal:  Sci Rep       Date:  2020-09-15       Impact factor: 4.379

  5 in total

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