Literature DB >> 25615265

Long noncoding RNA transcriptome of plants.

Jun Liu1, Huan Wang, Nam-Hai Chua.   

Abstract

Since their discovery more than two decades ago, animal long noncoding RNAs (lncRNAs) have emerged as important regulators of many biological processes. Recently, a large number of lncRNAs have also been identified in higher plants, and here, we review their identification, classification and known regulatory functions in various developmental events and stress responses. Knowledge gained from a deeper understanding of this special group of noncoding RNAs may lead to biotechnological improvement of crops. Some possible examples in this direction are discussed.
© 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Entities:  

Keywords:  long noncoding RNA; post-translational regulation; transcriptional regulation

Mesh:

Substances:

Year:  2015        PMID: 25615265     DOI: 10.1111/pbi.12336

Source DB:  PubMed          Journal:  Plant Biotechnol J        ISSN: 1467-7644            Impact factor:   9.803


  93 in total

1.  ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis.

Authors:  Jun Sung Seo; Hai-Xi Sun; Bong Soo Park; Chung-Hao Huang; Shyi-Dong Yeh; Choonkyun Jung; Nam-Hai Chua
Journal:  Plant Cell       Date:  2017-04-11       Impact factor: 11.277

2.  Identification of alternatively spliced gene isoforms and novel noncoding RNAs by single-molecule long-read sequencing in Camellia.

Authors:  Zhikang Hu; Tao Lyu; Chao Yan; Yupeng Wang; Ning Ye; Zhengqi Fan; Xinlei Li; Jiyuan Li; Hengfu Yin
Journal:  RNA Biol       Date:  2020-03-19       Impact factor: 4.652

3.  Genome-wide identification of long non-coding RNA targets of the tomato MADS box transcription factor RIN and function analysis.

Authors:  Tongtong Yu; David T W Tzeng; Ran Li; Jianye Chen; Silin Zhong; Daqi Fu; Benzhong Zhu; Yunbo Luo; Hongliang Zhu
Journal:  Ann Bot       Date:  2019-02-15       Impact factor: 4.357

4.  Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs.

Authors:  Jules Deforges; Rodrigo S Reis; Philippe Jacquet; Shaoline Sheppard; Veerendra P Gadekar; Gene Hart-Smith; Andrea Tanzer; Ivo L Hofacker; Christian Iseli; Ioannis Xenarios; Yves Poirier
Journal:  Plant Physiol       Date:  2019-02-13       Impact factor: 8.340

5.  Splicing conservation signals in plant long noncoding RNAs.

Authors:  Jose Antonio Corona-Gomez; Irving Jair Garcia-Lopez; Peter F Stadler; Selene L Fernandez-Valverde
Journal:  RNA       Date:  2020-04-02       Impact factor: 4.942

Review 6.  Plant Noncoding RNAs: Hidden Players in Development and Stress Responses.

Authors:  Yu Yu; Yuchan Zhang; Xuemei Chen; Yueqin Chen
Journal:  Annu Rev Cell Dev Biol       Date:  2019-08-12       Impact factor: 13.827

7.  A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance.

Authors:  Tao Qin; Huayan Zhao; Peng Cui; Nour Albesher; Liming Xiong
Journal:  Plant Physiol       Date:  2017-09-08       Impact factor: 8.340

8.  Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana.

Authors:  Ruimin Gao; Peng Liu; Nadia Irwanto; De Rong Loh; Sek-Man Wong
Journal:  Plant Cell Rep       Date:  2016-07-29       Impact factor: 4.570

Review 9.  Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.).

Authors:  Shabir H Wani; Prateek Tripathi; Abbu Zaid; Ghana S Challa; Anuj Kumar; Vinay Kumar; Jyoti Upadhyay; Rohit Joshi; Manoj Bhatt
Journal:  Plant Mol Biol       Date:  2018-08-14       Impact factor: 4.076

10.  Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.

Authors:  Chunman Zuo; Matthew Blow; Avinash Sreedasyam; Rita C Kuo; Govindarajan Kunde Ramamoorthy; Ivone Torres-Jerez; Guifen Li; Mei Wang; David Dilworth; Kerrie Barry; Michael Udvardi; Jeremy Schmutz; Yuhong Tang; Ying Xu
Journal:  Biotechnol Biofuels       Date:  2018-06-20       Impact factor: 6.040

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