Literature DB >> 25614095

An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test.

Simone Tonti1, Santa Di Cataldo2, Andrea Bottino1, Elisa Ficarra1.   

Abstract

The automatization of the analysis of Indirect Immunofluorescence (IIF) images is of paramount importance for the diagnosis of autoimmune diseases. This paper proposes a solution to one of the most challenging steps of this process, the segmentation of HEp-2 cells, through an adaptive marker-controlled watershed approach. Our algorithm automatically conforms the marker selection pipeline to the peculiar characteristics of the input image, hence it is able to cope with different fluorescent intensities and staining patterns without any a priori knowledge. Furthermore, it shows a reduced sensitivity to over-segmentation errors and uneven illumination, that are typical issues of IIF imaging.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ANA testing; Cell pattern analysis; HEp-2 cell segmentation; Indirect immunofluorescence; Microscope image processing

Mesh:

Substances:

Year:  2015        PMID: 25614095     DOI: 10.1016/j.compmedimag.2014.12.005

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  5 in total

1.  Split and Merge Watershed: a two-step method for cell segmentation in fluorescence microscopy images.

Authors:  Margarita Gamarra; Eduardo Zurek; Hugo Jair Escalante; Leidy Hurtado; Homero San-Juan-Vergara
Journal:  Biomed Signal Process Control       Date:  2019-06-04       Impact factor: 3.880

2.  Digital Image Analysis of Cells and Computational Tools for the Study of Mechanism of RSV Entry to Human Bronchial Epithelium.

Authors:  Margarita Gamarra; Eduardo Zurek
Journal:  Sist Tecnol Inf (2017)       Date:  2017-07-13

3.  Design of a Computer-Assisted System to Automatically Detect Cell Types Using ANA IIF Images for the Diagnosis of Autoimmune Diseases.

Authors:  Chung-Chuan Cheng; Chun-Feng Lu; Tsu-Yi Hsieh; Yaw-Jen Lin; Jin-Shiuh Taur; Yung-Fu Chen
Journal:  J Med Syst       Date:  2015-08-20       Impact factor: 4.460

Review 4.  Mining textural knowledge in biological images: Applications, methods and trends.

Authors:  Santa Di Cataldo; Elisa Ficarra
Journal:  Comput Struct Biotechnol J       Date:  2016-11-24       Impact factor: 7.271

5.  A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images.

Authors:  Lamees Nasser; Thomas Boudier
Journal:  Sci Rep       Date:  2019-04-04       Impact factor: 4.379

  5 in total

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