| Literature DB >> 25613404 |
Lei Zhang1, Gengyan Xiong2, Dong Fang3, Xuesong Li4, Jin Liu5, Weimin Ci6, Wei Zhao7, Nirmish Singla8, Zhisong He9, Liqun Zhou10.
Abstract
BACKGROUND: Aberrant methylation of genes is one of the most common epigenetic modifications involved in the development of urothelial carcinoma. However, it is unknown the predictive role of methylation to contralateral new upper tract urothelial carcinoma (UTUC) after radical nephroureterectomy (RNU). We retrospectively investigated the predictive role of DNA methylation and other clinicopathological factors in the contralateral upper tract urothelial carcinoma (UTUC) recurrence after radical nephroureterectomy (RNU) in a large single-center cohort of patients.Entities:
Mesh:
Year: 2015 PMID: 25613404 PMCID: PMC4307673 DOI: 10.1186/s13046-015-0120-2
Source DB: PubMed Journal: J Exp Clin Cancer Res ISSN: 0392-9078
Primer sequences for MSP
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| ABCC6 M | GGCGTTCGGGGAGTT | CGACCTCGACCCGATAAT | 57 | 247 |
| ABCC6 U | AGGTGTTTGGGGAGTTGG | TCTCAACCTCAACCCAATAATC | 58 | 244 |
| BRCA1 M | TCGTGGTAACGGAAAAGCGC | AAATCTCAACGAACTCACGCC | 58 | 75 |
| BRCA1 U | TTGGTTTTTGTGGTAATGGAAAAGTGT | CAAAAAATCTCAACAAACTCACACCA | 56 | 86 |
| CDH1 M | GTGGGCGGGTCGTTAGTTTC | CTCACAAATACTTTACAATTCCGACG | 57 | 172 |
| CDH1 U | GGTGGGTGGGTTGTTAGTTTTGT | AACTCACAAATCTTTACAATTCCAAC | 59 | 172 |
| GDF15 M | CGGCGGTTATTTGTATTTGC | AACGATCGTATCACGTCCC | 60 | 132 |
| GDF15 U | ATTTGGTGGTTATTTGTATTTGT | AACAATCATATCACATCCCACA | 57 | 135 |
| HSPA2 M | TAAGAATCGGGAATTGGGC | AATCGATACCGATAACCGAA | 58 | 172 |
| HSPA2 U | TTATAAGAATTGGGAATTGGGT | AAATCAATACCAATAACCAAA | 55 | 176 |
| RASSF1A M | GGGTTTTGCGAGAGCGCG | GCTAACAAACGCGAACCG | 64 | 169 |
| RASSF1A U | GGTTTTGTGAGAGTGTGTTTAG | CACTAACAAACACAAACCAAAC | 59 | 169 |
| SALL3 M | GTTCGCGTAGTCGTCGTC | TACTCGAAAACCCCGTCA | 57 | 203 |
| SALL3 U | GTGGTTTGTGTAGTTGTTGTTGTT | CCCAACCCTCACCATACTC | 57 | 220 |
| THBS1 M | TGCGAGCGTTTTTTTAAATGC | TAAACTCGCAAACCAACTCG | 62 | 74 |
| THBS1 U | GTTTGGTTGTTGTTTATTGGTTG | CCTAAACTCACAAACCAACTCA | 62 | 115 |
| TMEFF2 M | GAAGAGGGGCGTTAGTTC | ACGCTAACCCGAATAAAACT | 57 | 151 |
| TMEFF2 U | GGAAGAGGGGTGTTAGTT | AACACTAACCCAAATAAAACT | 55 | 153 |
| VIM M | TTATAAAAATAGCGTTTTCGGC | ATAACGCGAACTAACTCCCG | 59 | 143 |
| VIM U | GGGTTATAAAAATAGTGTTTTTGGT | ACAATAACACAAACTAACTCCCA | 56 | 149 |
Patient demographic and histological data
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| Gender | |
| Male | 295 (44.4) |
| Female | 369 (55.6) |
| Age | |
| <70 | 372 (56.0) |
| ≥70 | 292 (44.0) |
| Preoperative renal function | |
| eGFR ≥ 60 | 298 (44.9) |
| 60 >eGFR ≥15 | 316 (47.6) |
| eGFR <15 | 50 (7.5) |
| Side | |
| Left | 326 (49.1) |
| Right | 338 (50.9) |
| Transplant recipient | |
| No | 653 (98.3) |
| Yes | 11 (1.7) |
| Ipsilateral hydronephrosis | |
| Absence | 290 (43.7) |
| Presence | 374 (56.3) |
| Tobacco consumption | |
| No | 543 (81.8) |
| Yes | 121 (18.2) |
| Surgical approach | |
| Open | 445 (67.0) |
| Laparoscopic | 219 (33.0) |
| Tumor size | |
| ≤3 cm | 373 (56.2) |
| >3 cm | 291 (43.8) |
| Architecture | |
| Papillary | 515 (77.6) |
| Sessile | 149 (22.4) |
| Ureteroscopy | |
| No | 583 (87.8) |
| Yes | 81 (12.2) |
| Location | |
| Pelvis | 368 (55.4) |
| Ureter | 296 (44.6) |
| Upper ureter | 58 (8.7) |
| Middle ureter | 68 (10.2) |
| Lower ureter | 170 (25.6) |
| Multifocality | |
| No | 505 (76.1) |
| Yes | 159 (23.9) |
| CIS | |
| Absence | 645 (97.1) |
| Presence | 19 (2.9) |
| Contralateral recurrence | |
| No | 634 (95.5) |
| Yes | 30 (4.5) |
| Bladder recurrence | |
| No | 441 (66.4) |
| Yes | 223 (33.6) |
| Before contralateral UTUC | 209 (31.5) |
| Concomitant and after contralateral UTUC | 14 (2.1) |
| Tumor stage | |
| Ta or T1 | 221 (33.3) |
| T2 | 237 (35.7) |
| T3 | 194 (29.2) |
| T4 | 12 (1.8) |
| Tumor grade | |
| G1 | 21 (3.2) |
| G2 | 360 (54.2) |
| G3 | 283 (42.6) |
| N status | |
| N+ | 47 (7.1) |
| cN0 or pN0 | 617 (92.9) |
| Adjuvant therapy | |
| No | 641 (96.5) |
| Yes | 23 (3.5) |
eGFR = estimated glomerular filtration rate; CIS = carcinoma in situ; UTUC = upper tract urothelial carcinoma.
Summary of the frequency of methylation of the genes in UTUC based on the main clinicopathologic variables
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| ABCC6 | 14.5 | 12.6 | 16.8 | 11.5 | 16.8 |
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| 13.7 | 15.5 | 11.3 | 15.4 | 9.9 | 15.5 |
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| 12.6 | 17.0 |
| BRCA1 | 17.2 | 17.2 | 17.1 |
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| 16.4 | 18.2 | 20.1 | 16.2 |
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| CDH1 | 14.2 | 13.2 | 15.4 | 14.2 | 14.1 |
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| 14.5 | 13.7 | 11.9 | 14.9 | 15.7 | 13.8 |
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| GDF15 | 49.2 | 48.4 | 50.3 | 53.2 | 46.1 |
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| 46.4 | 52.9 | 49.7 | 49.1 | 55.4 | 47.9 |
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| HSPA2 | 41.6 | 38.4 | 45.5 | 40.0 | 42.8 |
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| 39.9 | 43.6 | 38.4 | 42.6 | 37.2 | 42.5 |
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| RASSF1A | 26.5 | 26.1 | 27.1 | 25.4 | 27.4 |
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| 24.1 | 29.6 |
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| 19.8 | 27.8 |
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| SALL3 | 34.6 | 33.3 | 36.3 | 33.2 | 35.8 | 33.4 | 39.6 | 35.1 | 34.0 | 30.8 | 35.8 |
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| 32.8 | 38.8 | 33.3 | 36.4 |
| THBS1 | 25.2 | 22.8 | 28.1 | 26.4 | 24.1 |
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| 27.6 | 22.0 | 21.4 | 26.3 | 26.6 | 24.9 |
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| TMEFF2 | 43.4 | 41.1 | 46.2 | 43.4 | 43.4 | 41.7 | 49.0 |
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| 37.7 | 45.1 | 41.3 | 43.8 |
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| 40.4 | 47.3 |
| VIM | 63.6 |
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| 66.4 | 61.2 | 63.5 | 63.8 | 60.6 | 67.4 | 61.6 | 64.2 | 66.1 | 63.0 | 61.4 | 68.4 | 64.0 | 62.9 |
aThe stage was divided into a low stage (stage Ta, T1, or T2) group and a high stage (stage T3 or T4) group.
bThe grade was divided into a low grade (grade G1 or G2) group and a high grade (grade G3) group.
The data reaching for statistical significance was present in bold type.
The methylation of VIM (P = 0.008), BRCA1 (P = 0.005), TMEFF2 (P = 0.003), and RASSF1A (P = 0.037) was correlated with the age, gender, tumors size, and mulifocality, respectively. The methylation of BRCA1 (P = 0.019) and SALL3 (P = 0.036) were correlated with smoke history. The methylation of ABCC6 (P = 0.025), BRCA1 (P = 0.000), CDH1 (P = 0.001), GDF15 (P = 0.002), HSPA2 (P = 0.014), RASSF1A (P = 0.045), and TSHB1 (P = 0.000) was correlated with the architecture of tumors. Methylation was associated with advanced tumor grade for BRCA1 (P = 0.003), CDH1 (P = 0.002), HSPA2 (P = 0.009), RASSF1A (P = 0.017), and THBS1 (P = 0.000), and unmethylated GDF15 (P = 0.002) promoter was associated with advanced tumor grade. Methylation was associated with advanced tumor stage for ABCC6 (P = 0.050), BRCA1 (P = 0.032), CDH1 (P = 0.004), GDF15 (P = 0.005), HSPA2 (P = 0.000), RASSF1A (P = 0.003), TSHB1 (P = 0.018), and TMEFF2 (P = 0.002).
MI based on the clinicopathological factors
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| Contralateral recurrence | 0.001* | |||
| No | 634 | 0.3361 | 0.22882 | |
| Yes | 30 | 0.1967 | 0.19025 | |
| Grade | <0.001* | |||
| G1 | 21 | 0.1667 | 0.14606 | |
| G2 | 360 | 0.3161 | 0.22121 | |
| G3 | 283 | 0.3594 | 0.23732 | |
| Stage | <0.001* | |||
| Ta or T1 | 221 | 0.3009 | 0.21062 | |
| T2 | 237 | 0.2975 | 0.21803 | |
| T3 | 194 | 0.3964 | 0.24629 | |
| T4 | 12 | 0.4250 | 0.24541 | |
| N status | 0.014* | |||
| cN0 or pNo | 617 | 0.3241 | 0.22860 | |
| N+ | 47 | 0.4043 | 0.22259 | |
| Architecture | 0.001* | |||
| Papillary | 515 | 0.3140 | 0.22534 | |
| Sessile | 149 | 0.3846 | 0.23358 | |
| Ipsilateral hydronephrosis | 0.015* | |||
| Absence | 290 | 0.3545 | 0.23248 | |
| Presence | 374 | 0.3107 | 0.22461 | |
| Main tumor location | 0.000* | |||
| Pelvic | 368 | 0.3677 | 0.23324 | |
| Upper ureter | 58 | 0.2914 | 0.22027 | |
| Middle ureter | 68 | 0.2824 | 0.21644 | |
| Lower ureter | 170 | 0.2800 | 0.21334 | |
| Transplant recipient | 0.011* | |||
| No | 653 | 0.3326 | 0.22861 | |
| Yes | 11 | 0.1636 | 0.19117 | |
MI = methylation index.
*Statistically significant.
Figure 1Cancer-specific survival curves for MI.
Univariate analysis for contralateral UTUC recurrence after RNU
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| Gender | 2.051 | 0.152 |
| Age | 2.256 | 0.112 |
| Renal function | 27.746 | <0.001* |
| Side | 0.140 | 0.708 |
| Transplant recipient | 74.902 | <0.001* |
| Ipsilateral hydronephrosis | 1.367 | 0.242 |
| Smoke | 0.063 | 0.802 |
| Surgical approach | 1.891 | 0.169 |
| Tumor size | 0.817 | 0.366 |
| Architecture | 0.737 | 0.391 |
| Ureteroscopy | 0.828 | 0.363 |
| Location | 2.015 | 0.569 |
| Mulifocality | 0.536 | 0.464 |
| CIS | 0.899 | 0.343 |
| Bladder recurrenceb | 4.612 | 0.032* |
| Tumor stage | 1.104 | 0.776 |
| Tumor grade | 1.730 | 0.421 |
| N status | 0.230 | 0.631 |
| Adjuvant therapy | 0.015 | 0.902 |
| ABCC6 | 1.963 | 0.161 |
| BRCA1 | 0.226 | 0.634 |
| CDH1 | 2.226 | 0.136 |
| GDF15 | 1.077 | 0.299 |
| HSPA2 | 0.084 | 0.772 |
| RASSF1A | 5.481 | 0.019* |
| SALL3 | 1.696 | 0.193 |
| THBS1 | 2.971 | 0.085 |
| TMEFF2 | 1.072 | 0.301 |
| VIM | 5.004 | 0.025* |
| MIc | 3.918 | 0.048* |
aKaplan Meier test was used for univariate analysis.
bOnly bladder recurrence before contralateral UTUC recurrence was analyzed.
c Because the MI correlated with methylation status of RASSF1A (r = 0.412, P = 0.000) and VIM (r = 0.478, P = 0.000), the MI was not analyzed in the multivariate models.
*Statistically significant.
Multivariate analysis for contralateral UTUC recurrence after RNU
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| Renal function | 0.418 | 0.242-0.723 | 0.002* |
| Transplant recipient | 20.914 | 8.208-53.284 | <0.001* |
| Bladder recurrencea | 0.258 | 0.097-0.691 | 0.007* |
| RASSF1A | 0.218 | 0.051-0.927 | 0.039* |
| VIM | 0.278 | ||
*Statistically significant.
aOnly bladder recurrence before contralateral UTUC recurrence was analyzed.
Figure 2Estimated contralateral UTUC-free Kaplan-Meier survival curves stratified by methylation status of RASSF1A (A, = 0.019), renal transplant history (B, 0.001), preoperative renal function (C, 0.001), bladder recurrence (D, = 0.032).