Literature DB >> 25612699

Arbitrary order permanent Cartesian multipolar electrostatic interactions.

H A Boateng1, I T Todorov1.   

Abstract

Recently, there has been a concerted effort to implement advanced classical potential energy surfaces by adding higher order multipoles to fixed point charge electrostatics in a bid to increase the accuracy of simulations of condensed phase systems. One major hurdle is the unwieldy nature of the expressions which in part has limited developers mostly to including only dipoles and quadrupoles. In this paper, we present a generalization of the Cartesian formulation of electrostatic multipolar interactions that enables the specification of an arbitrary order of multipoles. Specifically, we derive formulas for arbitrary order implementation of the particle mesh Ewald method and give a closed form formula for the stress tensor in the reciprocal space. In addition, we provide recurrence relations for common electrostatic potentials employed in molecular simulations, which allows for the generalization to arbitrary order and guarantees a computational cost that scales as O(p(3)) for Cartesian multipole interactions of order p.

Year:  2015        PMID: 25612699     DOI: 10.1063/1.4905952

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Generalized and efficient algorithm for computing multipole energies and gradients based on Cartesian tensors.

Authors:  Dejun Lin
Journal:  J Chem Phys       Date:  2015-09-21       Impact factor: 3.488

2.  Efficient treatment of induced dipoles.

Authors:  Andrew C Simmonett; Frank C Pickard; Yihan Shao; Thomas E Cheatham; Bernard R Brooks
Journal:  J Chem Phys       Date:  2015-08-21       Impact factor: 3.488

3.  An empirical extrapolation scheme for efficient treatment of induced dipoles.

Authors:  Andrew C Simmonett; Frank C Pickard; Jay W Ponder; Bernard R Brooks
Journal:  J Chem Phys       Date:  2016-10-28       Impact factor: 3.488

Review 4.  Advanced Potential Energy Surfaces for Molecular Simulation.

Authors:  Alex Albaugh; Henry A Boateng; Richard T Bradshaw; Omar N Demerdash; Jacek Dziedzic; Yuezhi Mao; Daniel T Margul; Jason Swails; Qiao Zeng; David A Case; Peter Eastman; Lee-Ping Wang; Jonathan W Essex; Martin Head-Gordon; Vijay S Pande; Jay W Ponder; Yihan Shao; Chris-Kriton Skylaris; Ilian T Todorov; Mark E Tuckerman; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2016-09-22       Impact factor: 3.466

5.  On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations.

Authors:  Leonid Pereyaslavets; Igor Kurnikov; Ganesh Kamath; Oleg Butin; Alexey Illarionov; Igor Leontyev; Michael Olevanov; Michael Levitt; Roger D Kornberg; Boris Fain
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-20       Impact factor: 11.205

6.  Prediction of conformationally dependent atomic multipole moments in carbohydrates.

Authors:  Salvatore Cardamone; Paul L A Popelier
Journal:  J Comput Chem       Date:  2015-11-08       Impact factor: 3.376

7.  A New Relatively Simple Approach to Multipole Interactions in Either Spherical Harmonics or Cartesians, Suitable for Implementation into Ewald Sums.

Authors:  Christian J Burnham; Niall J English
Journal:  Int J Mol Sci       Date:  2019-12-31       Impact factor: 5.923

8.  Structural Transition States Explored With Minimalist Coarse Grained Models: Applications to Calmodulin.

Authors:  Francesco Delfino; Yuri Porozov; Eugene Stepanov; Gaik Tamazian; Valentina Tozzini
Journal:  Front Mol Biosci       Date:  2019-10-15
  8 in total

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