Literature DB >> 25605777

Mathematically guided approaches to distinguish models of periodic patterning.

Tom W Hiscock1, Sean G Megason2.   

Abstract

How periodic patterns are generated is an open question. A number of mechanisms have been proposed--most famously, Turing's reaction-diffusion model. However, many theoretical and experimental studies focus on the Turing mechanism while ignoring other possible mechanisms. Here, we use a general model of periodic patterning to show that different types of mechanism (molecular, cellular, mechanical) can generate qualitatively similar final patterns. Observation of final patterns is therefore not sufficient to favour one mechanism over others. However, we propose that a mathematical approach can help to guide the design of experiments that can distinguish between different mechanisms, and illustrate the potential value of this approach with specific biological examples.
© 2015. Published by The Company of Biologists Ltd.

Keywords:  Mathematical biology; Pattern formation; Periodic patterning; Pigment pattern; Reaction-diffusion; Turing

Mesh:

Year:  2015        PMID: 25605777      PMCID: PMC4302999          DOI: 10.1242/dev.107441

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  84 in total

1.  Extracellular matrix environment influences chondrogenic pattern formation in limb bud micromass culture: experimental verification of theoretical models.

Authors:  T Miura; K Shiota
Journal:  Anat Rec       Date:  2000-01-01

2.  Determination of left-right patterning of the mouse embryo by artificial nodal flow.

Authors:  Shigenori Nonaka; Hidetaka Shiratori; Yukio Saijoh; Hiroshi Hamada
Journal:  Nature       Date:  2002-07-04       Impact factor: 49.962

3.  Dynamic filopodia transmit intermittent Delta-Notch signaling to drive pattern refinement during lateral inhibition.

Authors:  Michael Cohen; Marios Georgiou; Nicola L Stevenson; Mark Miodownik; Buzz Baum
Journal:  Dev Cell       Date:  2010-07-20       Impact factor: 12.270

4.  Modeling digits. Digit patterning is controlled by a Bmp-Sox9-Wnt Turing network modulated by morphogen gradients.

Authors:  J Raspopovic; L Marcon; L Russo; J Sharpe
Journal:  Science       Date:  2014-08-01       Impact factor: 47.728

5.  Generation of biological pattern and form.

Authors:  J D Murray; G F Oster
Journal:  IMA J Math Appl Med Biol       Date:  1984

6.  Parameter space for turing instability in reaction diffusion mechanisms: a comparison of models.

Authors:  J D Murray
Journal:  J Theor Biol       Date:  1982-09-07       Impact factor: 2.691

Review 7.  How the zebrafish gets its stripes.

Authors:  J F Rawls; E M Mellgren; S L Johnson
Journal:  Dev Biol       Date:  2001-12-15       Impact factor: 3.582

8.  A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus.

Authors:  S Kondo; R Asal
Journal:  Nature       Date:  1995-08-31       Impact factor: 49.962

9.  In toto imaging of embryogenesis with confocal time-lapse microscopy.

Authors:  Sean G Megason
Journal:  Methods Mol Biol       Date:  2009

10.  Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.

Authors:  Hans Georg Frohnhöfer; Jana Krauss; Hans-Martin Maischein; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2013-07       Impact factor: 6.868

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  32 in total

1.  High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals.

Authors:  Luciano Marcon; Xavier Diego; James Sharpe; Patrick Müller
Journal:  Elife       Date:  2016-04-08       Impact factor: 8.140

2.  Tissue self-organization underlies morphogenesis of the notochord.

Authors:  James Norman; Emma L Sorrell; Yi Hu; Vaishnavi Siripurapu; Jamie Garcia; Jennifer Bagwell; Patrick Charbonneau; Sharon R Lubkin; Michel Bagnat
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-09-24       Impact factor: 6.237

Review 3.  Single cells get together: High-resolution approaches to study the dynamics of early mouse development.

Authors:  Néstor Saiz; Berenika Plusa; Anna-Katerina Hadjantonakis
Journal:  Semin Cell Dev Biol       Date:  2015-07-13       Impact factor: 7.727

4.  Model of pattern formation in marsh ecosystems with nonlocal interactions.

Authors:  Sofya Zaytseva; Junping Shi; Leah B Shaw
Journal:  J Math Biol       Date:  2019-10-12       Impact factor: 2.259

5.  On the Formation of Digits and Joints during Limb Development.

Authors:  Tom W Hiscock; Patrick Tschopp; Clifford J Tabin
Journal:  Dev Cell       Date:  2017-06-05       Impact factor: 12.270

6.  Emergence of a geometric pattern of cell fates from tissue-scale mechanics in the Drosophila eye.

Authors:  Kevin D Gallagher; Madhav Mani; Richard W Carthew
Journal:  Elife       Date:  2022-01-17       Impact factor: 8.140

7.  Evaluation of Ventilation-Induced Lung Inflammation Through Multi-Scale Simulations.

Authors:  Israr Bin M Ibrahim; Ramana M Pidaparti; Kevin R Ward
Journal:  IEEE J Transl Eng Health Med       Date:  2017-12-27       Impact factor: 3.316

8.  Two MYB Proteins in a Self-Organizing Activator-Inhibitor System Produce Spotted Pigmentation Patterns.

Authors:  Baoqing Ding; Erin L Patterson; Srinidhi V Holalu; Jingjian Li; Grace A Johnson; Lauren E Stanley; Anna B Greenlee; Foen Peng; H D Bradshaw; Michael L Blinov; Benjamin K Blackman; Yao-Wu Yuan
Journal:  Curr Biol       Date:  2020-02-20       Impact factor: 10.834

9.  Orientation of Turing-like Patterns by Morphogen Gradients and Tissue Anisotropies.

Authors:  Tom W Hiscock; Sean G Megason
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

10.  Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions.

Authors:  Simon van Vliet; Alma Dal Co; Annina R Winkler; Stefanie Spriewald; Bärbel Stecher; Martin Ackermann
Journal:  Cell Syst       Date:  2018-04-11       Impact factor: 10.304

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