Literature DB >> 25604487

Diazole-based powdered cocrystal featuring a helical hydrogen-bonded network: structure determination from PXRD, solid-state NMR and computer modeling.

Mariana Sardo1, Sérgio M Santos1, Artem A Babaryk2, Concepción López3, Ibon Alkorta4, José Elguero4, Rosa M Claramunt5, Luís Mafra6.   

Abstract

We present the structure of a new equimolar 1:1 cocrystal formed by 3,5-dimethyl-1H-pyrazole (dmpz) and 4,5-dimethyl-1H-imidazole (dmim), determined by means of powder X-ray diffraction data combined with solid-state NMR that provided insight into topological details of hydrogen bonding connectivities and weak interactions such as CH···π contacts. The use of various 1D/2D (13)C, (15)N and (1)H high-resolution solid-state NMR techniques provided structural insight on local length scales revealing internuclear proximities and relative orientations between the dmim and dmpz molecular building blocks of the studied cocrystal. Molecular modeling and DFT calculations were also employed to generate meaningful structures. DFT refinement was able to decrease the figure of merit R(F(2)) from ~11% (PXRD only) to 5.4%. An attempt was made to rationalize the role of NH···N and CH···π contacts in stabilizing the reported cocrystal. For this purpose four imidazole derivatives with distinct placement of methyl substituents were reacted with dmpz to understand the effect of methylation in blocking or enabling certain intermolecular contacts. Only one imidazole derivative (dmim) was able to incorporate into the dmpz trimeric motif thus resulting in a cocrystal, which contains both hydrophobic (methyl groups) and hydrophilic components that self-assemble to form an atypical 1D network of helicoidal hydrogen bonded pattern, featuring structural similarities with alpha-helix arrangements in proteins. The 1:1 dmpz···dmim compound I is the first example of a cocrystal formed by two different azoles.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CH···π interactions; Cocrystal; Crystal engineering; Diazole; Hydrogen bond network; NMR Crystallography; Solid-state NMR

Year:  2014        PMID: 25604487     DOI: 10.1016/j.ssnmr.2014.12.005

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  10 in total

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Journal:  Phys Chem Chem Phys       Date:  2016-07-19       Impact factor: 3.676

2.  A structure determination protocol based on combined analysis of 3D-ED data, powder XRD data, solid-state NMR data and DFT-D calculations reveals the structure of a new polymorph of l-tyrosine.

Authors:  Christopher J H Smalley; Harriet E Hoskyns; Colan E Hughes; Duncan N Johnstone; Tom Willhammar; Mark T Young; Christopher J Pickard; Andrew J Logsdail; Paul A Midgley; Kenneth D M Harris
Journal:  Chem Sci       Date:  2022-03-30       Impact factor: 9.969

3.  Determination of a complex crystal structure in the absence of single crystals: analysis of powder X-ray diffraction data, guided by solid-state NMR and periodic DFT calculations, reveals a new 2'-deoxyguanosine structural motif.

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Journal:  Chem Sci       Date:  2017-03-16       Impact factor: 9.825

4.  Structure and physicochemical characterization of a naproxen-picolinamide cocrystal.

Authors:  Hannah E Kerr; Lorna K Softley; Kuthuru Suresh; Paul Hodgkinson; Ivana Radosavljevic Evans
Journal:  Acta Crystallogr C Struct Chem       Date:  2017-02-06       Impact factor: 1.172

5.  Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of dithianon and pyrimethanil.

Authors:  Ann Christin Pöppler; Emily K Corlett; Harriet Pearce; Mark P Seymour; Matthew Reid; Mark G Montgomery; Steven P Brown
Journal:  Acta Crystallogr C Struct Chem       Date:  2017-02-06       Impact factor: 1.172

6.  Structure elucidation of a complex CO2-based organic framework material by NMR crystallography.

Authors:  Julien Leclaire; Guillaume Poisson; Fabio Ziarelli; Gerard Pepe; Frédéric Fotiadu; Federico M Paruzzo; Aaron J Rossini; Jean-Nicolas Dumez; Bénédicte Elena-Herrmann; Lyndon Emsley
Journal:  Chem Sci       Date:  2016-03-22       Impact factor: 9.825

7.  Solid-State Structural Properties of Alloxazine Determined from Powder XRD Data in Conjunction with DFT-D Calculations and Solid-State NMR Spectroscopy: Unraveling the Tautomeric Identity and Pathways for Tautomeric Interconversion.

Authors:  Christopher J H Smalley; Andrew J Logsdail; Colan E Hughes; Dinu Iuga; Mark T Young; Kenneth D M Harris
Journal:  Cryst Growth Des       Date:  2021-11-22       Impact factor: 4.076

8.  Solid-State Study of the Structure, Dynamics, and Thermal Processes of Safinamide Mesylate─A New Generation Drug for the Treatment of Neurodegenerative Diseases.

Authors:  Tomasz Pawlak; Marcin Oszajca; Małgorzata Szczesio; Marek J Potrzebowski
Journal:  Mol Pharm       Date:  2021-12-02       Impact factor: 4.939

9.  Accurate location of hydrogen atoms in hydrogen bonds of tizoxanide from the combination of experimental and theoretical models.

Authors:  Ana L Reviglio; Fernando A Martínez; Marcos D A Montero; Yamila Garro-Linck; Gustavo A Aucar; Norma R Sperandeo; Gustavo A Monti
Journal:  RSC Adv       Date:  2021-02-17       Impact factor: 3.361

10.  An NMR crystallography investigation of furosemide.

Authors:  Miri Zilka; Jonathan R Yates; Steven P Brown
Journal:  Magn Reson Chem       Date:  2018-10-11       Impact factor: 2.447

  10 in total

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