Literature DB >> 25599092

Classification of Alzheimer Diagnosis from ADNI Plasma Biomarker Data.

Jue Mo1, Stuart Maudsley2, Bronwen Martin3, Sana Siddiqui2, Huey Cheung4, Calvin A Johnson1.   

Abstract

Research into modeling the progression of Alzheimer's disease (AD) has made recent progress in identifying plasma proteomic biomarkers to identify the disease at the pre-clinical stage. In contrast with cerebral spinal fluid (CSF) biomarkers and PET imaging, plasma biomarker diagnoses have the advantage of being cost-effective and minimally invasive, thereby improving our understanding of AD and hopefully leading to early interventions as research into this subject advances. The Alzheimer's Disease Neuroimaging Initiative* (ADNI) has collected data on 190 plasma analytes from individuals diagnosed with AD as well subjects with mild cognitive impairment and cognitively normal (CN) controls. We propose an approach to classify subjects as AD or CN via an ensemble of classifiers trained and validated on ADNI data. Classifier performance is enhanced by an augmentation of a selective biomarker feature space with principal components obtained from the entire set of biomarkers. This procedure yields accuracy of 89% and area under the ROC curve of 94%.

Entities:  

Keywords:  Alzheimer’s Disease Neuroimaging Initiative (ADNI); feature augmentation; feature clustering

Year:  2013        PMID: 25599092      PMCID: PMC4295502          DOI: 10.1145/2506583.2506637

Source DB:  PubMed          Journal:  ACM Conf Bioinform Comput Biol Biomed Inform (2013)


  13 in total

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Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2005 Apr-Jun       Impact factor: 3.710

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Journal:  Lancet Neurol       Date:  2010-01       Impact factor: 44.182

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Journal:  Nat Med       Date:  2007-10-14       Impact factor: 53.440

7.  PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

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8.  Multivariate protein signatures of pre-clinical Alzheimer's disease in the Alzheimer's disease neuroimaging initiative (ADNI) plasma proteome dataset.

Authors:  Daniel Johnstone; Elizabeth A Milward; Regina Berretta; Pablo Moscato
Journal:  PLoS One       Date:  2012-04-02       Impact factor: 3.240

9.  Textrous!: extracting semantic textual meaning from gene sets.

Authors:  Hongyu Chen; Bronwen Martin; Caitlin M Daimon; Sana Siddiqui; Louis M Luttrell; Stuart Maudsley
Journal:  PLoS One       Date:  2013-04-30       Impact factor: 3.240

10.  Identification of a 5-protein biomarker molecular signature for predicting Alzheimer's disease.

Authors:  Martín Gómez Ravetti; Pablo Moscato
Journal:  PLoS One       Date:  2008-09-03       Impact factor: 3.240

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