Literature DB >> 25588603

Investigation of next-generation sequencing technologies as a diagnostic tool for amyotrophic lateral sclerosis.

Sarah Morgan1, Maryam Shoai1, Pietro Fratta2, Katie Sidle3, Richard Orrell3, Mary G Sweeney4, Aleksey Shatunov5, William Sproviero5, Ashley Jones5, Ammar Al-Chalabi5, Andrea Malaspina6, Henry Houlden7, John Hardy1, Alan Pittman8.   

Abstract

The future of genetic diagnostics will see a move toward massively parallel next-generation sequencing of a patient's DNA. Amyotrophic lateral sclerosis (ALS) is one of the diseases that would benefit from this prospect. Exploring this idea, we designed a screening panel to sequence 25 ALS-linked genes and examined samples from 95 patients with both familial and sporadic ALS. Forty-three rare polymorphisms were detected in this cohort. A third of these have already been reported with respect to ALS, leaving 28 novel variants all open for further investigation. This study highlights the potential benefits of next-generation sequencing as a reliable, cost and time efficient, diagnostic, and research tool for ALS.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ALS; Amyotrophic lateral sclerosis; Diagnosis; Genetic; MiSeq; NGS; Neurogenetics; Next-generation sequencing; Sequencing

Mesh:

Year:  2014        PMID: 25588603     DOI: 10.1016/j.neurobiolaging.2014.12.017

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  17 in total

1.  Distinguishing the dominant species of pathogen in ethmoidal sinusitis by sequencing DNA dataset analysis.

Authors:  Junyi Zhang; Shuai He; Yunchuan Li; Minggang Lv; Hongzheng Wei; Bin Qu; Yani Zheng; Chunhua Hu
Journal:  Exp Ther Med       Date:  2018-09-11       Impact factor: 2.447

Review 2.  Advances in the discovery of genetic risk factors for complex forms of neurodegenerative disorders: contemporary approaches, success, challenges and prospects.

Authors:  Sumeet Kumar; Navneesh Yadav; Sanjay Pandey; B K Thelma
Journal:  J Genet       Date:  2018-07       Impact factor: 1.166

Review 3.  Examining the relationship between astrocyte dysfunction and neurodegeneration in ALS using hiPSCs.

Authors:  Madeline Halpern; Kristen J Brennand; James Gregory
Journal:  Neurobiol Dis       Date:  2019-08-02       Impact factor: 5.996

4.  Exome sequencing uncovers hidden pathways in familial and sporadic ALS.

Authors:  Conceição Bettencourt; Henry Houlden
Journal:  Nat Neurosci       Date:  2015-05       Impact factor: 24.884

5.  Rare Variants in Neurodegeneration Associated Genes Revealed by Targeted Panel Sequencing in a German ALS Cohort.

Authors:  Stefanie Krüger; Florian Battke; Andrea Sprecher; Marita Munz; Matthis Synofzik; Ludger Schöls; Thomas Gasser; Torsten Grehl; Johannes Prudlo; Saskia Biskup
Journal:  Front Mol Neurosci       Date:  2016-10-13       Impact factor: 5.639

6.  Genotype-phenotype correlations and expansion of the molecular spectrum of AP4M1-related hereditary spastic paraplegia.

Authors:  Conceição Bettencourt; Vincenzo Salpietro; Stephanie Efthymiou; Viorica Chelban; Deborah Hughes; Alan M Pittman; Monica Federoff; Thomas Bourinaris; Martha Spilioti; Georgia Deretzi; Triantafyllia Kalantzakou; Henry Houlden; Andrew B Singleton; Georgia Xiromerisiou
Journal:  Orphanet J Rare Dis       Date:  2017-11-02       Impact factor: 4.123

Review 7.  NGS Technologies as a Turning Point in Rare Disease Research , Diagnosis and Treatment.

Authors:  Ana Fernandez-Marmiesse; Sofia Gouveia; Maria L Couce
Journal:  Curr Med Chem       Date:  2018-01-30       Impact factor: 4.530

8.  Whole exome sequencing and DNA methylation analysis in a clinical amyotrophic lateral sclerosis cohort.

Authors:  Fleur C Garton; Beben Benyamin; Qiongyi Zhao; Zhijun Liu; Jacob Gratten; Anjali K Henders; Zong-Hong Zhang; Janette Edson; Sarah Furlong; Sarah Morgan; Susan Heggie; Kathryn Thorpe; Casey Pfluger; Karen A Mather; Perminder S Sachdev; Allan F McRae; Matthew R Robinson; Sonia Shah; Peter M Visscher; Marie Mangelsdorf; Robert D Henderson; Naomi R Wray; Pamela A McCombe
Journal:  Mol Genet Genomic Med       Date:  2017-06-12       Impact factor: 2.183

9.  Targeted high throughput sequencing in hereditary ataxia and spastic paraplegia.

Authors:  Zafar Iqbal; Siri L Rydning; Iselin M Wedding; Jeanette Koht; Lasse Pihlstrøm; Aina H Rengmark; Sandra P Henriksen; Chantal M E Tallaksen; Mathias Toft
Journal:  PLoS One       Date:  2017-03-31       Impact factor: 3.240

10.  A comprehensive analysis of rare genetic variation in amyotrophic lateral sclerosis in the UK.

Authors:  Sarah Morgan; Aleksey Shatunov; William Sproviero; Ashley R Jones; Maryam Shoai; Deborah Hughes; Ahmad Al Khleifat; Andrea Malaspina; Karen E Morrison; Pamela J Shaw; Christopher E Shaw; Katie Sidle; Richard W Orrell; Pietro Fratta; John Hardy; Alan Pittman; Ammar Al-Chalabi
Journal:  Brain       Date:  2017-06-01       Impact factor: 13.501

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