Literature DB >> 25583953

Biology coming full circle: joining the whole and the parts.

John P Wikswo1, Andrew P Porter2.   

Abstract

The new cover of Experimental Biology and Medicine features the hermeneutic circle of biology, a concept we have adapted from the hermeneutic principle that one understands the whole only in terms of each part and the parts only in terms of the whole. Our hermeneutic circle summarizes the course of experimental biology through 2500 years of the achievements of reductionist research (understanding the parts), which culminates in our ability to rapidly sequence the genome. Rather than returning along the same path in a constructionist approach that simply builds upon this knowledge, but in reverse, an alternative is to close the circle with synthetic constructions that seek to integrate the full complexity of biological and physiological systems (understanding the whole), of which organs-on-chips are one example. This closing of the circle cannot be a comprehensively accurate representation of biology, but it can be a synthetic one that effectively defines particular biological subsystems. The illustration of the hermeneutic circle of biology is also intended to suggest both the multiple cycles that may be required to reach such a synthesis and the expansion of the circle in an outward spiral as knowledge increases. Our commentary explains the symbolism of the new cover in a philosophical and scientific discussion.
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Entities:  

Keywords:  Hermeneutic circle; physiology; reductionist vs. constructionist; synthetic biology; systems biology

Mesh:

Year:  2015        PMID: 25583953      PMCID: PMC4391629          DOI: 10.1177/1535370214564534

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  39 in total

Review 1.  The role of body-on-a-chip devices in drug and toxicity studies.

Authors:  M B Esch; T L King; M L Shuler
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

2.  The chronology of Galen's early career.

Authors:  V Nutton
Journal:  Class Q       Date:  1973

Review 3.  Engineering challenges of BioNEMS: the integration of microfluidics, micro- and nanodevices, models and external control for systems biology.

Authors:  J P Wikswo; A Prokop; F Baudenbacher; D Cliffel; B Csukas; M Velkovsky
Journal:  IEE Proc Nanobiotechnol       Date:  2006-08

4.  Description of the chemostat.

Authors:  A NOVICK; L SZILARD
Journal:  Science       Date:  1950-12-15       Impact factor: 47.728

Review 5.  Using physiologically-based pharmacokinetic-guided "body-on-a-chip" systems to predict mammalian response to drug and chemical exposure.

Authors:  Jong Hwan Sung; Balaji Srinivasan; Mandy Brigitte Esch; William T McLamb; Catia Bernabini; Michael L Shuler; James J Hickman
Journal:  Exp Biol Med (Maywood)       Date:  2014-06-20

Review 6.  Human enteroids as an ex-vivo model of host-pathogen interactions in the gastrointestinal tract.

Authors:  Jennifer Foulke-Abel; Julie In; Olga Kovbasnjuk; Nicholas C Zachos; Khalil Ettayebi; Sarah E Blutt; Joseph M Hyser; Xi-Lei Zeng; Sue E Crawford; James R Broughman; Mary K Estes; Mark Donowitz
Journal:  Exp Biol Med (Maywood)       Date:  2014-04-09

Review 7.  Three-dimensional osteogenic and chondrogenic systems to model osteochondral physiology and degenerative joint diseases.

Authors:  Peter G Alexander; Riccardo Gottardi; Hang Lin; Thomas P Lozito; Rocky S Tuan
Journal:  Exp Biol Med (Maywood)       Date:  2014-07-03

Review 8.  Biological and medical applications of a brain-on-a-chip.

Authors:  David Pamies; Thomas Hartung; Helena T Hogberg
Journal:  Exp Biol Med (Maywood)       Date:  2014-06-09

Review 9.  Microphysiological modeling of the reproductive tract: a fertile endeavor.

Authors:  Sharon L Eddie; J Julie Kim; Teresa K Woodruff; Joanna E Burdette
Journal:  Exp Biol Med (Maywood)       Date:  2014-04-15

Review 10.  A microphysiological system model of therapy for liver micrometastases.

Authors:  Amanda M Clark; Sarah E Wheeler; Donald P Taylor; Venkateswaran C Pillai; Carissa L Young; Rachelle Prantil-Baun; Transon Nguyen; Donna B Stolz; Jeffrey T Borenstein; Douglas A Lauffenburger; Raman Venkataramanan; Linda G Griffith; Alan Wells
Journal:  Exp Biol Med (Maywood)       Date:  2014-05-12
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  10 in total

Review 1.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

Authors:  Jennifer Brooke Treweek; Viviana Gradinaru
Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

2.  Launching our new EBM cover.

Authors:  Steven R Goodman
Journal:  Exp Biol Med (Maywood)       Date:  2015-01

3.  I-Wire Heart-on-a-Chip I: Three-dimensional cardiac tissue constructs for physiology and pharmacology.

Authors:  Veniamin Y Sidorov; Philip C Samson; Tatiana N Sidorova; Jeffrey M Davidson; Chee C Lim; John P Wikswo
Journal:  Acta Biomater       Date:  2016-11-04       Impact factor: 8.947

4.  Fitting tissue chips and microphysiological systems into the grand scheme of medicine, biology, pharmacology, and toxicology.

Authors:  David E Watson; Rosemarie Hunziker; John P Wikswo
Journal:  Exp Biol Med (Maywood)       Date:  2017-10

Review 5.  Circadian hormone control in a human-on-a-chip: In vitro biology's ignored component?

Authors:  Kevin J Cyr; Omero M Avaldi; John P Wikswo
Journal:  Exp Biol Med (Maywood)       Date:  2017-11

6.  Recreating blood-brain barrier physiology and structure on chip: A novel neurovascular microfluidic bioreactor.

Authors:  Jacquelyn A Brown; Virginia Pensabene; Dmitry A Markov; Vanessa Allwardt; M Diana Neely; Mingjian Shi; Clayton M Britt; Orlando S Hoilett; Qing Yang; Bryson M Brewer; Philip C Samson; Lisa J McCawley; James M May; Donna J Webb; Deyu Li; Aaron B Bowman; Ronald S Reiserer; John P Wikswo
Journal:  Biomicrofluidics       Date:  2015-10-26       Impact factor: 2.800

7.  How can precision medicine be applied to temporomandibular disorders and its comorbidities?

Authors:  Joan B Wilentz; Allen W Cowley
Journal:  Mol Pain       Date:  2017 Jan-Dec       Impact factor: 3.395

Review 8.  Microfluidic-Based Multi-Organ Platforms for Drug Discovery.

Authors:  Ahmad Rezaei Kolahchi; Nima Khadem Mohtaram; Hassan Pezeshgi Modarres; Mohammad Hossein Mohammadi; Armin Geraili; Parya Jafari; Mohsen Akbari; Amir Sanati-Nezhad
Journal:  Micromachines (Basel)       Date:  2016-09-08       Impact factor: 2.891

Review 9.  The Microbiome and the Gut-Liver-Brain Axis for Central Nervous System Clinical Pharmacology: Challenges in Specifying and Integrating In Vitro and In Silico Models.

Authors:  Kyle G Hawkins; Caleb Casolaro; Jacquelyn A Brown; David A Edwards; John P Wikswo
Journal:  Clin Pharmacol Ther       Date:  2020-05-29       Impact factor: 6.875

10.  Looking to the future of organs-on-chips: interview with Professor John Wikswo.

Authors:  John P Wikswo
Journal:  Future Sci OA       Date:  2017-01-20
  10 in total

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