Literature DB >> 25581568

Soil bacterial communities are shaped by temporal and environmental filtering: evidence from a long-term chronosequence.

Zachary Freedman1, Donald R Zak1,2.   

Abstract

Soil microbial communities are abundant, hyper-diverse and mediate global biogeochemical cycles, but we do not yet understand the processes mediating their assembly. Current hypothetical frameworks suggest temporal (e.g. dispersal limitation) and environmental (e.g. soil pH) filters shape microbial community composition; however, there is limited empirical evidence supporting this framework in the hyper-diverse soil environment, particularly at large spatial (i.e. regional to continental) and temporal (i.e. 100 to 1000 years) scales. Here, we present evidence from a long-term chronosequence (4000 years) that temporal and environmental filters do indeed shape soil bacterial community composition. Furthermore, nearly 20 years of environmental monitoring allowed us to control for potentially confounding environmental variation. Soil bacterial communities were phylogenetically distinct across the chronosequence. We determined that temporal and environmental factors accounted for significant portions of bacterial phylogenetic structure using distance-based linear models. Environmental factors together accounted for the majority of phylogenetic structure, namely, soil temperature (19%), pH (17%) and litter carbon:nitrogen (C:N; 17%). However, of all individual factors, time since deglaciation accounted for the greatest proportion of bacterial phylogenetic structure (20%). Taken together, our results provide empirical evidence that temporal and environmental filters act together to structure soil bacterial communities across large spatial and long-term temporal scales.
© 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

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Year:  2015        PMID: 25581568     DOI: 10.1111/1462-2920.12762

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  18 in total

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Authors:  Katie M McGee; William D Eaton; Shadi Shokralla; Mehrdad Hajibabaei
Journal:  Microb Ecol       Date:  2018-06-01       Impact factor: 4.552

2.  Seasonal, sub-seasonal and diurnal variation of soil bacterial community composition in a temperate deciduous forest.

Authors:  William J Landesman; Zachary B Freedman; David M Nelson
Journal:  FEMS Microbiol Ecol       Date:  2019-02-01       Impact factor: 4.194

3.  Bacterial Succession in Salt Marsh Soils Along a Short-term Invasion Chronosequence of Spartina alterniflora in the Yellow River Estuary, China.

Authors:  Guangliang Zhang; Junhong Bai; Qingqing Zhao; Jia Jia; Wei Wang; Xin Wang
Journal:  Microb Ecol       Date:  2019-08-24       Impact factor: 4.552

Review 4.  Indigenous microbial populations of abandoned mining sites and their role in natural attenuation.

Authors:  Satarupa Dey
Journal:  Arch Microbiol       Date:  2022-04-12       Impact factor: 2.552

5.  Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition.

Authors:  Nicholas J Bouskill; Tana E Wood; Richard Baran; Zhao Hao; Zaw Ye; Ben P Bowen; Hsiao Chien Lim; Peter S Nico; Hoi-Ying Holman; Benjamin Gilbert; Whendee L Silver; Trent R Northen; Eoin L Brodie
Journal:  Front Microbiol       Date:  2016-03-15       Impact factor: 5.640

6.  Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD).

Authors:  Anja Narr; Ali Nawaz; Lukas Y Wick; Hauke Harms; Antonis Chatzinotas
Journal:  Front Microbiol       Date:  2017-10-10       Impact factor: 5.640

Review 7.  SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree.

Authors:  John R Stevens; Todd R Jones; Michael Lefevre; Balasubramanian Ganesan; Bart C Weimer
Journal:  Comput Struct Biotechnol J       Date:  2017-07-06       Impact factor: 7.271

8.  Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses.

Authors:  Zachary B Freedman; Rima A Upchurch; Donald R Zak; Lauren C Cline
Journal:  Front Microbiol       Date:  2016-03-02       Impact factor: 5.640

9.  Environmental Factors Affecting Microbiota Dynamics during Traditional Solid-state Fermentation of Chinese Daqu Starter.

Authors:  Pan Li; Weifeng Lin; Xiong Liu; Xiaowen Wang; Lixin Luo
Journal:  Front Microbiol       Date:  2016-08-04       Impact factor: 5.640

10.  Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem Development.

Authors:  Stephanie Turner; Robert Mikutta; Sandra Meyer-Stüve; Georg Guggenberger; Frank Schaarschmidt; Cassandre S Lazar; Reiner Dohrmann; Axel Schippers
Journal:  Front Microbiol       Date:  2017-05-19       Impact factor: 5.640

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