Literature DB >> 25580543

Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.

Yukiko Tsuji1, Ruben Vanholme2,3, Yuki Tobimatsu4,5, Yasuyuki Ishikawa1, Clifton E Foster5,6, Naofumi Kamimura7, Shojiro Hishiyama8, Saki Hashimoto1, Amiu Shino9, Hirofumi Hara10, Kanna Sato-Izawa1, Paula Oyarce2,3, Geert Goeminne2,3, Kris Morreel2,3, Jun Kikuchi9, Toshiyuki Takano11, Masao Fukuda7, Yoshihiro Katayama12, Wout Boerjan2,3, John Ralph4,5, Eiji Masai7, Shinya Kajita1.   

Abstract

Bacteria-derived enzymes that can modify specific lignin substructures are potential targets to engineer plants for better biomass processability. The Gram-negative bacterium Sphingobium sp. SYK-6 possesses a Cα-dehydrogenase (LigD) enzyme that has been shown to oxidize the α-hydroxy functionalities in β-O-4-linked dimers into α-keto analogues that are more chemically labile. Here, we show that recombinant LigD can oxidize an even wider range of β-O-4-linked dimers and oligomers, including the genuine dilignols, guaiacylglycerol-β-coniferyl alcohol ether and syringylglycerol-β-sinapyl alcohol ether. We explored the possibility of using LigD for biosynthetically engineering lignin by expressing the codon-optimized ligD gene in Arabidopsis thaliana. The ligD cDNA, with or without a signal peptide for apoplast targeting, has been successfully expressed, and LigD activity could be detected in the extracts of the transgenic plants. UPLC-MS/MS-based metabolite profiling indicated that levels of oxidized guaiacyl (G) β-O-4-coupled dilignols and analogues were significantly elevated in the LigD transgenic plants regardless of the signal peptide attachment to LigD. In parallel, 2D NMR analysis revealed a 2.1- to 2.8-fold increased level of G-type α-keto-β-O-4 linkages in cellulolytic enzyme lignins isolated from the stem cell walls of the LigD transgenic plants, indicating that the transformation was capable of altering lignin structure in the desired manner.
© 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Entities:  

Keywords:  Arabidopsis thaliana; Cα-dehydrogenase; NMR; Sphingobium sp. SYK-6; lignin biosynthesis

Mesh:

Substances:

Year:  2015        PMID: 25580543     DOI: 10.1111/pbi.12316

Source DB:  PubMed          Journal:  Plant Biotechnol J        ISSN: 1467-7644            Impact factor:   9.803


  14 in total

1.  Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD1.

Authors:  Rebecca Van Acker; Annabelle Déjardin; Sandrien Desmet; Lennart Hoengenaert; Ruben Vanholme; Kris Morreel; Françoise Laurans; Hoon Kim; Nicholas Santoro; Cliff Foster; Geert Goeminne; Frédéric Légée; Catherine Lapierre; Gilles Pilate; John Ralph; Wout Boerjan
Journal:  Plant Physiol       Date:  2017-09-06       Impact factor: 8.340

2.  Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing.

Authors:  Lennart Hoengenaert; Marlies Wouters; Hoon Kim; Barbara De Meester; Kris Morreel; Steven Vandersyppe; Jacob Pollier; Sandrien Desmet; Geert Goeminne; John Ralph; Wout Boerjan; Ruben Vanholme
Journal:  Sci Adv       Date:  2022-07-13       Impact factor: 14.957

Review 3.  Spatio-Temporal Modification of Lignin Biosynthesis in Plants: A Promising Strategy for Lignocellulose Improvement and Lignin Valorization.

Authors:  Yongli Wang; Cunjin Gui; Jiangyan Wu; Xing Gao; Ting Huang; Fengjie Cui; Huan Liu; Sivasamy Sethupathy
Journal:  Front Bioeng Biotechnol       Date:  2022-07-01

4.  Engineering Curcumin Biosynthesis in Poplar Affects Lignification and Biomass Yield.

Authors:  Barbara De Meester; Paula Oyarce; Ruben Vanholme; Rebecca Van Acker; Yukiko Tsuji; Thijs Vangeel; Sander Van den Bosch; Jan Van Doorsselaere; Bert Sels; John Ralph; Wout Boerjan
Journal:  Front Plant Sci       Date:  2022-07-04       Impact factor: 6.627

Review 5.  Tailoring renewable materials via plant biotechnology.

Authors:  Lisanne de Vries; Sydne Guevara-Rozo; MiJung Cho; Li-Yang Liu; Scott Renneckar; Shawn D Mansfield
Journal:  Biotechnol Biofuels       Date:  2021-08-05       Impact factor: 6.040

6.  Grass Cell Walls: A Story of Cross-Linking.

Authors:  Ronald D Hatfield; David M Rancour; Jane M Marita
Journal:  Front Plant Sci       Date:  2017-01-18       Impact factor: 5.753

7.  NMR studies on lignocellulose deconstructions in the digestive system of the lower termite Coptotermes formosanus Shiraki.

Authors:  Didi Tarmadi; Yuki Tobimatsu; Masaomi Yamamura; Takuji Miyamoto; Yasuyuki Miyagawa; Toshiaki Umezawa; Tsuyoshi Yoshimura
Journal:  Sci Rep       Date:  2018-01-22       Impact factor: 4.379

8.  High-Throughput DNA sequencing of ancient wood.

Authors:  Stefanie Wagner; Frédéric Lagane; Andaine Seguin-Orlando; Mikkel Schubert; Thibault Leroy; Erwan Guichoux; Emilie Chancerel; Inger Bech-Hebelstrup; Vincent Bernard; Cyrille Billard; Yves Billaud; Matthias Bolliger; Christophe Croutsch; Katarina Čufar; Frédérique Eynaud; Karl Uwe Heussner; Joachim Köninger; Fabien Langenegger; Frédéric Leroy; Christine Lima; Nicoletta Martinelli; Garry Momber; André Billamboz; Oliver Nelle; Antoni Palomo; Raquel Piqué; Marianne Ramstein; Roswitha Schweichel; Harald Stäuble; Willy Tegel; Xavier Terradas; Florence Verdin; Christophe Plomion; Antoine Kremer; Ludovic Orlando
Journal:  Mol Ecol       Date:  2018-03-03       Impact factor: 6.185

9.  Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol.

Authors:  Hiroshi Teramura; Kengo Sasaki; Tomoko Oshima; Fumio Matsuda; Mami Okamoto; Tomokazu Shirai; Hideo Kawaguchi; Chiaki Ogino; Ko Hirano; Takashi Sazuka; Hidemi Kitano; Jun Kikuchi; Akihiko Kondo
Journal:  Biotechnol Biofuels       Date:  2016-02-02       Impact factor: 6.040

Review 10.  Plant-based biofuels.

Authors:  Elizabeth E Hood
Journal:  F1000Res       Date:  2016-02-17
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