Literature DB >> 25580472

Predicting the severity of motor neuron disease progression using electronic health record data with a cloud computing Big Data approach.

Kyung Dae Ko1, Tarek El-Ghazawi1, Dongkyu Kim2, Hiroki Morizono3.   

Abstract

Motor neuron diseases (MNDs) are a class of progressive neurological diseases that damage the motor neurons. An accurate diagnosis is important for the treatment of patients with MNDs because there is no standard cure for the MNDs. However, the rates of false positive and false negative diagnoses are still very high in this class of diseases. In the case of Amyotrophic Lateral Sclerosis (ALS), current estimates indicate 10% of diagnoses are false-positives, while 44% appear to be false negatives. In this study, we developed a new methodology to profile specific medical information from patient medical records for predicting the progression of motor neuron diseases. We implemented a system using Hbase and the Random forest classifier of Apache Mahout to profile medical records provided by the Pooled Resource Open-Access ALS Clinical Trials Database (PRO-ACT) site, and we achieved 66% accuracy in the prediction of ALS progress.

Entities:  

Keywords:  ALS; Big data; Cloud computing; Hbase; Mahout; Medical decision support sytem; Randomforest

Year:  2014        PMID: 25580472      PMCID: PMC4285703          DOI: 10.1109/CIBCB.2014.6845506

Source DB:  PubMed          Journal:  IEEE Symp Comput Intell Bioinforma Comput Biol Proc


  7 in total

1.  Random forest: a classification and regression tool for compound classification and QSAR modeling.

Authors:  Vladimir Svetnik; Andy Liaw; Christopher Tong; J Christopher Culberson; Robert P Sheridan; Bradley P Feuston
Journal:  J Chem Inf Comput Sci       Date:  2003 Nov-Dec

Review 2.  Motor neuron disease.

Authors:  M Swash
Journal:  Postgrad Med J       Date:  1992-07       Impact factor: 2.401

Review 3.  Misdiagnosis and missed diagnoses in patients with ALS.

Authors:  Jacqueline Cristini
Journal:  JAAPA       Date:  2006-07

4.  What's in a name? Lumping or splitting ALS, PLS, PMA, and the other motor neuron diseases.

Authors:  Jeffrey Rosenfeld; Michael Swash
Journal:  Neurology       Date:  2006-03-14       Impact factor: 9.910

Review 5.  Bringing big data to personalized healthcare: a patient-centered framework.

Authors:  Nitesh V Chawla; Darcy A Davis
Journal:  J Gen Intern Med       Date:  2013-09       Impact factor: 5.128

6.  G-DOC: a systems medicine platform for personalized oncology.

Authors:  Subha Madhavan; Yuriy Gusev; Michael Harris; David M Tanenbaum; Robinder Gauba; Krithika Bhuvaneshwar; Andrew Shinohara; Kevin Rosso; Lavinia A Carabet; Lei Song; Rebecca B Riggins; Sivanesan Dakshanamurthy; Yue Wang; Stephen W Byers; Robert Clarke; Louis M Weiner
Journal:  Neoplasia       Date:  2011-09       Impact factor: 5.715

7.  An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics.

Authors:  Ronald C Taylor
Journal:  BMC Bioinformatics       Date:  2010-12-21       Impact factor: 3.169

  7 in total
  2 in total

1.  Features based on variational mode decomposition for identification of neuromuscular disorder using EMG signals.

Authors:  Sukumar Nagineni; Sachin Taran; Varun Bajaj
Journal:  Health Inf Sci Syst       Date:  2018-09-20

2.  VariantSpark: population scale clustering of genotype information.

Authors:  Aidan R O'Brien; Neil F W Saunders; Yi Guo; Fabian A Buske; Rodney J Scott; Denis C Bauer
Journal:  BMC Genomics       Date:  2015-12-10       Impact factor: 3.969

  2 in total

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