Literature DB >> 25578068

Reduction in the structural instability of cloned eukaryotic tandem-repeat DNA by low-temperature culturing of host bacteria.

Watcharaporn Thapana1, Penporn Sujiwattanarat1, Kornsorn Srikulnath2, Hirohisa Hirai1, Akihiko Koga1.   

Abstract

Summary For accurate analyses of eukaryotic tandem-repeat DNA, it is often required to clone a genomic DNA fragment into a bacterial plasmid. It is, however, a serious problem that tandem-repeat DNA is frequently subjected to structural changes during maintenance or amplification in the host bacteria. Here, we show an example of a clear difference in the instability of tandem-repeat DNA between different culturing temperatures. A fragment of monkey centromeric DNA carried by pUC19 was considerably degraded by culturing bacteria at 37 °C, but the damage was reduced at 25 °C. Thus, culturing temperature is a significant factor for avoiding degradation, in addition to the genotype of the host bacteria.

Mesh:

Year:  2014        PMID: 25578068      PMCID: PMC7045003          DOI: 10.1017/S0016672314000172

Source DB:  PubMed          Journal:  Genet Res (Camb)        ISSN: 0016-6723            Impact factor:   1.588


  5 in total

1.  Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long-Tailed and Rhesus Macaques.

Authors:  Worapong Singchat; Syed Farhan Ahmad; Kitipong Jaisamut; Thitipong Panthum; Nattakan Ariyaraphong; Ekaphan Kraichak; Narongrit Muangmai; Prateep Duengkae; Sunchai Payungporn; Suchinda Malaivijitnond; Kornsorn Srikulnath
Journal:  Cells       Date:  2022-06-17       Impact factor: 7.666

2.  CENP-B box, a nucleotide motif involved in centromere formation, occurs in a New World monkey.

Authors:  Aorarat Suntronpong; Kazuto Kugou; Hiroshi Masumoto; Kornsorn Srikulnath; Kazuhiko Ohshima; Hirohisa Hirai; Akihiko Koga
Journal:  Biol Lett       Date:  2016-03       Impact factor: 3.703

3.  Higher-order repeat structure in alpha satellite DNA occurs in New World monkeys and is not confined to hominoids.

Authors:  Penporn Sujiwattanarat; Watcharaporn Thapana; Kornsorn Srikulnath; Yuriko Hirai; Hirohisa Hirai; Akihiko Koga
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

Review 4.  Consequence of Paradigm Shift with Repeat Landscapes in Reptiles: Powerful Facilitators of Chromosomal Rearrangements for Diversity and Evolution.

Authors:  Syed Farhan Ahmad; Worapong Singchat; Maryam Jehangir; Thitipong Panthum; Kornsorn Srikulnath
Journal:  Genes (Basel)       Date:  2020-07-21       Impact factor: 4.096

5.  A Recombinant System and Reporter Viruses for Papiine Alphaherpesvirus 2.

Authors:  Abdul Rahman Siregar; Sabine Gärtner; Jasper Götting; Philipp Stegen; Artur Kaul; Thomas F Schulz; Stefan Pöhlmann; Michael Winkler
Journal:  Viruses       Date:  2022-01-05       Impact factor: 5.048

  5 in total

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