Literature DB >> 25577359

Cross-platform metabolic profiling: application to the aquatic model organism Lymnaea stagnalis.

Sara Tufi1, Marja H Lamoree, Jacob De Boer, Pim E G Leonards.   

Abstract

The freshwater pond snail Lymnaea stagnalis is used in several studies on molecular and behavioral neurobiology and ecotoxicology showing its successful application as a model organism. In the present study, a cross-platform metabolomic approach has been evaluated to characterize the organ molecular phenotypes of L. stagnalis central nervous system (CNS), digestive gland (DG), and albumen gland (AG). Two types of tissue disruption methods were evaluated of which beads beating was the preferred method. To obtain a broad picture of the hydrophilic and lipophilic metabolome, two complementary analytical platforms have been employed: liquid chromatography (LC) and gas chromatography (GC) coupled to high-resolution mass spectrometry. Furthermore, to increase the power to separate small polar metabolites, hydrophilic interaction liquid chromatography (HILIC) was applied. The analytical platform performances have been evaluated based on the metabolome coverage, number of molecular features, reproducibility, and multivariate data analysis (MVDA) clustering. This multiplatform approach is a starting point for future global metabolic profiling applications on L. stagnalis.

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Year:  2015        PMID: 25577359     DOI: 10.1007/s00216-014-8431-2

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  1 in total

Review 1.  How close are we to complete annotation of metabolomes?

Authors:  Mark R Viant; Irwin J Kurland; Martin R Jones; Warwick B Dunn
Journal:  Curr Opin Chem Biol       Date:  2017-01-21       Impact factor: 8.822

  1 in total

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