Literature DB >> 25572219

Cotranslational protein folding reveals the selective use of synonymous codons along the coding sequence of a low expression gene.

Suvendra Kumar Ray1, Vishwa Jyoti Baruah, Siddhartha Sankar Satapathy, Rajat Banerjee.   

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Year:  2014        PMID： 25572219     DOI： 10.1007/s12041-014-0429-1

Source DB:  PubMed          Journal:  J Genet        ISSN： 0022-1333            Impact factor:   1.166


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  28 in total

1.  The selection-mutation-drift theory of synonymous codon usage.

Authors:  M Bulmer
Journal:  Genetics       Date:  1991-11       Impact factor: 4.562

Review 2.  Selection on codon bias.

Authors:  Ruth Hershberg; Dmitri A Petrov
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

Review 3.  The formation and stabilization of protein structure.

Authors:  C B Anfinsen
Journal:  Biochem J       Date:  1972-07       Impact factor: 3.857

4.  Strand-specific mutational bias influences codon usage of weakly expressed genes in Escherichia coli.

Authors:  Bhesh Raj Powdel; Munindra Borah; Suvendra K Ray
Journal:  Genes Cells       Date:  2010-06-07       Impact factor: 1.891

Review 5.  Synonymous but not the same: the causes and consequences of codon bias.

Authors:  Joshua B Plotkin; Grzegorz Kudla
Journal:  Nat Rev Genet       Date:  2010-11-23       Impact factor: 53.242

6.  Evidence of non-random mutation rates suggests an evolutionary risk management strategy.

Authors:  Iñigo Martincorena; Aswin S N Seshasayee; Nicholas M Luscombe
Journal:  Nature       Date:  2012-05-03       Impact factor: 49.962

7.  A general model of codon bias due to GC mutational bias.

Authors:  Gareth A Palidwor; Theodore J Perkins; Xuhua Xia
Journal:  PLoS One       Date:  2010-10-27       Impact factor: 3.240

8.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

9.  Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli.

Authors:  W Konigsberg; G N Godson
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

10.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
Journal:  BMC Genomics       Date:  2008-02-27       Impact factor: 3.969
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  4 in total

1.  Computational evidence that fast translation speed can increase the probability of cotranslational protein folding.

Authors:  Ercheng Wang; Jun Wang; Changjun Chen; Yi Xiao
Journal:  Sci Rep       Date:  2015-10-21       Impact factor: 4.379

2.  An Analysis of Single Nucleotide Substitution in Genetic Codons - Probabilities and Outcomes.

Authors:  Tariq Abdullah; Muniba Faiza; Prashant Pant; Mohd Rayyan Akhtar; Pratibha Pant
Journal:  Bioinformation       Date:  2016-06-15

3.  Genetic Code Optimization for Cotranslational Protein Folding: Codon Directional Asymmetry Correlates with Antiparallel Betasheets, tRNA Synthetase Classes.

Authors:  Hervé Seligmann; Ganesh Warthi
Journal:  Comput Struct Biotechnol J       Date:  2017-08-12       Impact factor: 7.271

4.  Discrepancy among the synonymous codons with respect to their selection as optimal codon in bacteria.

Authors:  Siddhartha Sankar Satapathy; Bhesh Raj Powdel; Alak Kumar Buragohain; Suvendra Kumar Ray
Journal:  DNA Res       Date:  2016-10-01       Impact factor: 4.458
  4 in total

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