Literature DB >> 25571523

Parallel ICA with multiple references: a semi-blind multivariate approach.

Jiayu Chen, Vince D Calhoun, Alvaro E Ulloa, Jingyu Liu.   

Abstract

High data dimensionality poses a major challenge for imaging genomic studies. To address this issue, a semi-blind multivariate approach, parallel independent component analysis with multiple references (pICA-MR), is proposed. pICA-MR extracts imaging and genetic components in parallel and enhances inter-modality correlations. Prior knowledge is incorporated to emphasize genetic factors with specific attributes. Particularly, pICA-MR can investigate multiple genetic references to explore functional interactions among genes. Simulations demonstrate robust performances with Euclidean distance employed as a metric for reference similarity, where components pointed by the same references are reliably identified and the detection power is significantly improved compared to blind methods.

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Year:  2014        PMID: 25571523      PMCID: PMC4960973          DOI: 10.1109/EMBC.2014.6945155

Source DB:  PubMed          Journal:  Annu Int Conf IEEE Eng Med Biol Soc        ISSN: 2375-7477


  11 in total

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3.  A principal components regression approach to multilocus genetic association studies.

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4.  Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach.

Authors:  Maria Vounou; Thomas E Nichols; Giovanni Montana
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5.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
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6.  Combining fMRI and SNP data to investigate connections between brain function and genetics using parallel ICA.

Authors:  Jingyu Liu; Godfrey Pearlson; Andreas Windemuth; Gualberto Ruano; Nora I Perrone-Bizzozero; Vince Calhoun
Journal:  Hum Brain Mapp       Date:  2009-01       Impact factor: 5.038

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Authors:  Erik B Erhardt; Elena A Allen; Yonghua Wei; Tom Eichele; Vince D Calhoun
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8.  Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.

Authors:  Shaun M Purcell; Naomi R Wray; Jennifer L Stone; Peter M Visscher; Michael C O'Donovan; Patrick F Sullivan; Pamela Sklar
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

9.  Guided exploration of genomic risk for gray matter abnormalities in schizophrenia using parallel independent component analysis with reference.

Authors:  Jiayu Chen; Vince D Calhoun; Godfrey D Pearlson; Nora Perrone-Bizzozero; Jing Sui; Jessica A Turner; Juan R Bustillo; Stefan Ehrlich; Scott R Sponheim; José M Cañive; Beng-Choon Ho; Jingyu Liu
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Authors:  Dongdong Lin; Jigang Zhang; Jingyao Li; Vince D Calhoun; Hong-Wen Deng; Yu-Ping Wang
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  4 in total

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2.  G-protein genomic association with normal variation in gray matter density.

Authors:  Jiayu Chen; Vince D Calhoun; Alejandro Arias-Vasquez; Marcel P Zwiers; Kimm van Hulzen; Guillén Fernández; Simon E Fisher; Barbara Franke; Jessica A Turner; Jingyu Liu
Journal:  Hum Brain Mapp       Date:  2015-08-07       Impact factor: 5.038

3.  High and Low Levels of an NTRK2-Driven Genetic Profile Affect Motor- and Cognition-Associated Frontal Gray Matter in Prodromal Huntington's Disease.

Authors:  Jennifer A Ciarochi; Jingyu Liu; Vince Calhoun; Hans Johnson; Maria Misiura; H Jeremy Bockholt; Flor A Espinoza; Arvind Caprihan; Sergey Plis; Jessica A Turner; Jane S Paulsen
Journal:  Brain Sci       Date:  2018-06-22

4.  Multimodal fusion of brain imaging data: A key to finding the missing link(s) in complex mental illness.

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  4 in total

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