Literature DB >> 25570174

Multisensory interface for 5D stem cell image volumes.

Michael Koerner, Eric Wait, Mark Winter, Chris Bjornsson, Erzsebet Kokovay, Yue Wang, Susan K Goderie, Sally Temple, Andrew R Cohen.   

Abstract

Biological imaging of live cell and tissue using 3D microscopy is able to capture time-lapse image sequences showing multiple molecular markers labeling different biological structures simultaneously. In order to analyze this complex multi-dimensional image sequence data, there is a need for automated quantitative algorithms, and for methods to visualize and interact with both the data and the analytical results. Traditional computational human input devices such as the keyboard and mouse are no longer adequate for complex tasks such as manipulating and navigating 3+ dimensional volumes. In this paper, we have developed a new interaction system for interfacing with big data sets using the human visual system together with touch, force and audio feedback. This system includes real-time dynamic 3D visualization, haptic interaction via exoskeletal glove, and tonal auditory components that seamlessly create an immersive environment for efficient qualitative analysis.

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Year:  2014        PMID: 25570174      PMCID: PMC4321857          DOI: 10.1109/EMBC.2014.6943806

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  3 in total

1.  Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing.

Authors:  Mark Winter; Eric Wait; Badrinath Roysam; Susan K Goderie; Rania Ahmed Naguib Ali; Erzsebet Kokovay; Sally Temple; Andrew R Cohen
Journal:  Nat Protoc       Date:  2011-11-17       Impact factor: 13.491

2.  Adult SVZ stem cells lie in a vascular niche: a quantitative analysis of niche cell-cell interactions.

Authors:  Qin Shen; Yue Wang; Erzsebet Kokovay; Gang Lin; Shu-Mien Chuang; Susan K Goderie; Badrinath Roysam; Sally Temple
Journal:  Cell Stem Cell       Date:  2008-09-11       Impact factor: 24.633

3.  Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences.

Authors:  Eric Wait; Mark Winter; Chris Bjornsson; Erzsebet Kokovay; Yue Wang; Susan Goderie; Sally Temple; Andrew R Cohen
Journal:  BMC Bioinformatics       Date:  2014-10-03       Impact factor: 3.169

  3 in total

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