Literature DB >> 25568878

Application of next-generation sequencing technologies in Neurology.

Teng Jiang1, Meng-Shan Tan1, Lan Tan1, Jin-Tai Yu1.   

Abstract

Genetic risk factors that underlie many rare and common neurological diseases remain poorly understood because of the multi-factorial and heterogeneous nature of these disorders. Although genome-wide association studies (GWAS) have successfully uncovered numerous susceptibility genes for these diseases, odds ratios associated with risk alleles are generally low and account for only a small proportion of estimated heritability. These results implicated that there are rare (present in <5% of the population) but not causative variants exist in the pathogenesis of these diseases, which usually have large effect size and cannot be captured by GWAS. With the decreasing cost of next-generation sequencing (NGS) technologies, whole-genome sequencing (WGS) and whole-exome sequencing (WES) have enabled the rapid identification of rare variants with large effect size, which made huge progress in understanding the basis of many Mendelian neurological conditions as well as complex neurological diseases. In this article, recent NGS-based studies that aimed to investigate genetic causes for neurological diseases, including Alzheimer's disease, Parkinson's disease, epilepsy, multiple sclerosis, stroke, amyotrophic lateral sclerosis and spinocerebellar ataxias, have been reviewed. In addition, we also discuss the future directions of NGS applications in this article.

Entities:  

Keywords:  Next-generation sequencing (NGS); genetics; neurological diseases; whole-exome sequencing (WES); whole-genome sequencing (WGS)

Year:  2014        PMID: 25568878      PMCID: PMC4260045          DOI: 10.3978/j.issn.2305-5839.2014.11.11

Source DB:  PubMed          Journal:  Ann Transl Med        ISSN: 2305-5839


  69 in total

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3.  A mutation in APP protects against Alzheimer's disease and age-related cognitive decline.

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Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

4.  Spinal muscular atrophy associated with progressive myoclonic epilepsy is caused by mutations in ASAH1.

Authors:  Jie Zhou; Marcel Tawk; Francesco Danilo Tiziano; Julien Veillet; Monica Bayes; Flora Nolent; Virginie Garcia; Serenella Servidei; Enrico Bertini; Francesc Castro-Giner; Yavuz Renda; Stéphane Carpentier; Nathalie Andrieu-Abadie; Ivo Gut; Thierry Levade; Haluk Topaloglu; Judith Melki
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5.  Targeted next generation sequencing as a diagnostic tool in epileptic disorders.

Authors:  Johannes R Lemke; Erik Riesch; Tim Scheurenbrand; Max Schubach; Christian Wilhelm; Isabelle Steiner; Jörg Hansen; Carolina Courage; Sabina Gallati; Sarah Bürki; Susi Strozzi; Barbara Goeggel Simonetti; Sebastian Grunt; Maja Steinlin; Michael Alber; Markus Wolff; Thomas Klopstock; Eva C Prott; Rüdiger Lorenz; Christiane Spaich; Sabine Rona; Maya Lakshminarasimhan; Judith Kröll; Thomas Dorn; Günter Krämer; Matthis Synofzik; Felicitas Becker; Yvonne G Weber; Holger Lerche; Detlef Böhm; Saskia Biskup
Journal:  Epilepsia       Date:  2012-05-21       Impact factor: 5.864

6.  UBQLN2/ubiquilin 2 mutation and pathology in familial amyotrophic lateral sclerosis.

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Review 8.  Alzheimer's disease genetics: current knowledge and future challenges.

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Journal:  Int J Geriatr Psychiatry       Date:  2010-10-19       Impact factor: 3.485

9.  Variant of TREM2 associated with the risk of Alzheimer's disease.

Authors:  Thorlakur Jonsson; Hreinn Stefansson; Stacy Steinberg; Ingileif Jonsdottir; Palmi V Jonsson; Jon Snaedal; Sigurbjorn Bjornsson; Johanna Huttenlocher; Allan I Levey; James J Lah; Dan Rujescu; Harald Hampel; Ina Giegling; Ole A Andreassen; Knut Engedal; Ingun Ulstein; Srdjan Djurovic; Carla Ibrahim-Verbaas; Albert Hofman; M Arfan Ikram; Cornelia M van Duijn; Unnur Thorsteinsdottir; Augustine Kong; Kari Stefansson
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

Review 10.  Genetics of motor neuron disorders: new insights into pathogenic mechanisms.

Authors:  Patrick A Dion; Hussein Daoud; Guy A Rouleau
Journal:  Nat Rev Genet       Date:  2009-10-13       Impact factor: 53.242

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  20 in total

Review 1.  Next generation sequencing in endocrine practice.

Authors:  Gregory P Forlenza; Amy Calhoun; Kenneth B Beckman; Tanya Halvorsen; Elwaseila Hamdoun; Heather Zierhut; Kyriakie Sarafoglou; Lynda E Polgreen; Bradley S Miller; Brandon Nathan; Anna Petryk
Journal:  Mol Genet Metab       Date:  2015-05-03       Impact factor: 4.797

2.  Detection of a rare mutation in the ferroportin gene through targeted next generation sequencing.

Authors:  Ludovica Ferbo; Paola M Manzini; Sadaf Badar; Natascia Campostrini; Alberto Ferrarini; Massimo Delledonne; Tiziana Francisci; Valter Tassi; Adriano Valfrè; Anna M Dall'omo; Sergio D'antico; Domenico Girelli; Antonella Roetto; Marco De Gobbi
Journal:  Blood Transfus       Date:  2016-04-28       Impact factor: 3.443

3.  Practices and views of neurologists regarding the use of whole-genome sequencing in clinical settings: a web-based survey.

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Review 4.  Advancements in Genomic and Behavioral Neuroscience Analysis for the Study of Normal and Pathological Brain Function.

Authors:  Annalisa M Baratta; Adam J Brandner; Sonja L Plasil; Rachel C Rice; Sean P Farris
Journal:  Front Mol Neurosci       Date:  2022-06-23       Impact factor: 6.261

5.  A stroke gene panel for whole-exome sequencing.

Authors:  Andreea Ilinca; Sofie Samuelsson; Paul Piccinelli; Maria Soller; Ulf Kristoffersson; Arne G Lindgren
Journal:  Eur J Hum Genet       Date:  2018-10-24       Impact factor: 4.246

6.  Whole-Exome Sequencing in 22 Young Ischemic Stroke Patients With Familial Clustering of Stroke.

Authors:  Andreea Ilinca; Nicolas Martinez-Majander; Sofie Samuelsson; Paul Piccinelli; Katarina Truvé; John Cole; Steven Kittner; Maria Soller; Ulf Kristoffersson; Turgut Tatlisumak; Andreas Puschmann; Jukka Putaala; Arne Lindgren
Journal:  Stroke       Date:  2020-03-16       Impact factor: 7.914

Review 7.  Cell type-specific transcriptome profiling in mammalian brains.

Authors:  Peter R LoVerso; Feng Cui
Journal:  Front Biosci (Landmark Ed)       Date:  2016-06-01

8.  RNAseq analysis for the diagnosis of muscular dystrophy.

Authors:  Hernan Gonorazky; Minggao Liang; Beryl Cummings; Monkol Lek; Johann Micallef; Cynthia Hawkins; Raveen Basran; Ronald Cohn; Michael D Wilson; Daniel MacArthur; Christian R Marshall; Peter N Ray; James J Dowling
Journal:  Ann Clin Transl Neurol       Date:  2015-12-08       Impact factor: 4.511

9.  Mutations in the Heme Exporter FLVCR1 Cause Sensory Neurodegeneration with Loss of Pain Perception.

Authors:  Deborah Chiabrando; Marco Castori; Maja di Rocco; Martin Ungelenk; Sebastian Gießelmann; Matteo Di Capua; Annalisa Madeo; Paola Grammatico; Sophie Bartsch; Christian A Hübner; Fiorella Altruda; Lorenzo Silengo; Emanuela Tolosano; Ingo Kurth
Journal:  PLoS Genet       Date:  2016-12-06       Impact factor: 5.917

Review 10.  Application of Next-Generation Sequencing in Neurodegenerative Diseases: Opportunities and Challenges.

Authors:  Cigir Biray Avci; Behrouz Shademan; Masoud Nikanfar; Alireza Nourazarian
Journal:  Neuromolecular Med       Date:  2020-05-12       Impact factor: 3.843

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