Literature DB >> 25566802

APOBEC3B: pathological consequences of an innate immune DNA mutator.

Michael B Burns, Brandon Leonard, Reuben S Harris1.   

Abstract

Cancer is a disease that results from alterations in the cellular genome. Several recent studies have identified mutational signatures that implicate a variety of mutagenic processes in cancer, a major one of which is explained by the enzymatic activity of the DNA cytosine deaminase, APOBEC3B. As a deaminase, APOBEC3B converts cytosines to uracils in single-stranded DNA. Failure to properly repair these uracil lesions can result in a diverse array of mutations. For instance, DNA uracils can template the insertion of complementary adenines leading to C-to-T transition mutations. DNA uracils can also be converted into abasic sites that, depending upon the DNA polymerase recruited to bypass this lesion in the template strand, can lead to adenine insertion and C-to-T mutations as well as cytosine insertion and C-to-G transversion mutations. Finally, DNA uracils can also be converted into DNA breaks that may precipitate some types of larger chromosomal aberrations observed in cancer. These studies cumulatively demonstrate that APOBEC3B is a major source of genetic heterogeneity in several human cancers and, as such, this enzyme may prove to be a critical diagnostic and therapeutic target.

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Year:  2015        PMID: 25566802     DOI: 10.4103/2319-4170.148904

Source DB:  PubMed          Journal:  Biomed J        ISSN: 2319-4170            Impact factor:   4.910


  29 in total

1.  APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast.

Authors:  Natalie Saini; Steven A Roberts; Joan F Sterling; Ewa P Malc; Piotr A Mieczkowski; Dmitry A Gordenin
Journal:  DNA Repair (Amst)       Date:  2017-03-21

2.  Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing.

Authors:  Ramin Sakhtemani; Vimukthi Senevirathne; Jessica Stewart; Madusha L W Perera; Roger Pique-Regi; Michael S Lawrence; Ashok S Bhagwat
Journal:  J Biol Chem       Date:  2019-08-19       Impact factor: 5.157

3.  Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments.

Authors:  Hajnalka L Pálinkás; Angéla Békési; Gergely Róna; Lőrinc Pongor; Gábor Papp; Gergely Tihanyi; Eszter Holub; Ádám Póti; Carolina Gemma; Simak Ali; Michael J Morten; Eli Rothenberg; Michele Pagano; Dávid Szűts; Balázs Győrffy; Beáta G Vértessy
Journal:  Elife       Date:  2020-09-21       Impact factor: 8.140

4.  Use of deep whole-genome sequencing data to identify structure risk variants in breast cancer susceptibility genes.

Authors:  Xingyi Guo; Jiajun Shi; Qiuyin Cai; Xiao-Ou Shu; Jing He; Wanqing Wen; Jamie Allen; Paul Pharoah; Alison Dunning; David J Hunter; Peter Kraft; Douglas F Easton; Wei Zheng; Jirong Long
Journal:  Hum Mol Genet       Date:  2018-03-01       Impact factor: 6.150

Review 5.  APOBEC and Cancer Viroimmunotherapy: Thinking the Unthinkable.

Authors:  Richard G Vile; Alan Melcher; Hardev Pandha; Kevin J Harrington; Jose S Pulido
Journal:  Clin Cancer Res       Date:  2021-02-08       Impact factor: 12.531

6.  Replication catastrophe induced by cyclic hypoxia leads to increased APOBEC3B activity.

Authors:  Samuel B Bader; Tiffany S Ma; Charlotte J Simpson; Jiachen Liang; Sakura Eri B Maezono; Monica M Olcina; Francesca M Buffa; Ester M Hammond
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

7.  APOBEC3G Expression Correlates with T-Cell Infiltration and Improved Clinical Outcomes in High-grade Serous Ovarian Carcinoma.

Authors:  Brandon Leonard; Gabriel J Starrett; Matthew J Maurer; Ann L Oberg; Mieke Van Bockstal; Jo Van Dorpe; Olivier De Wever; Jozien Helleman; Anieta M Sieuwerts; Els M J J Berns; John W M Martens; Brett D Anderson; William L Brown; Kimberly R Kalli; Scott H Kaufmann; Reuben S Harris
Journal:  Clin Cancer Res       Date:  2016-03-25       Impact factor: 12.531

Review 8.  APOBEC Enzymes: Mutagenic Fuel for Cancer Evolution and Heterogeneity.

Authors:  Charles Swanton; Nicholas McGranahan; Gabriel J Starrett; Reuben S Harris
Journal:  Cancer Discov       Date:  2015-06-19       Impact factor: 39.397

9.  A Tumor-Promoting Phorbol Ester Causes a Large Increase in APOBEC3A Expression and a Moderate Increase in APOBEC3B Expression in a Normal Human Keratinocyte Cell Line without Increasing Genomic Uracils.

Authors:  Sachini U Siriwardena; Madusha L W Perera; Vimukthi Senevirathne; Jessica Stewart; Ashok S Bhagwat
Journal:  Mol Cell Biol       Date:  2018-12-11       Impact factor: 5.069

10.  An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.

Authors:  Kin Chan; Steven A Roberts; Leszek J Klimczak; Joan F Sterling; Natalie Saini; Ewa P Malc; Jaegil Kim; David J Kwiatkowski; David C Fargo; Piotr A Mieczkowski; Gad Getz; Dmitry A Gordenin
Journal:  Nat Genet       Date:  2015-08-10       Impact factor: 38.330

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