Literature DB >> 25564845

Viral ssRNAs are indeed compact.

A Ben-Shaul1, W M Gelbart2.   

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Year:  2015        PMID： 25564845      PMCID： PMC4286589          DOI： 10.1016/j.bpj.2014.11.010

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  13 in total

1.  Statistical mechanics of secondary structures formed by random RNA sequences.

Authors:  R Bundschuh; T Hwa
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-02-11

2.  Forces and pressures in DNA packaging and release from viral capsids.

Authors:  Shelly Tzlil; James T Kindt; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

3.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

4.  Ionic strength-dependent persistence lengths of single-stranded RNA and DNA.

Authors:  Huimin Chen; Steve P Meisburger; Suzette A Pabit; Julie L Sutton; Watt W Webb; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

5.  Evidence that viral RNAs have evolved for efficient, two-stage packaging.

Authors:  Alexander Borodavka; Roman Tuma; Peter G Stockley
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

6.  Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses.

Authors:  Luca Tubiana; Anže Lošdorfer Božič; Cristian Micheletti; Rudolf Podgornik
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

7.  The size of RNA as an ideal branched polymer.

Authors:  Li Tai Fang; William M Gelbart; Avinoam Ben-Shaul
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

8.  In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein.

Authors:  Mauricio Comas-Garcia; Ruben D Cadena-Nava; A L N Rao; Charles M Knobler; William M Gelbart
Journal:  J Virol       Date:  2012-09-05       Impact factor: 5.103

9.  RAG: an update to the RNA-As-Graphs resource.

Authors:  Joseph A Izzo; Namhee Kim; Shereef Elmetwaly; Tamar Schlick
Journal:  BMC Bioinformatics       Date:  2011-05-31       Impact factor: 3.169

10.  Viral RNAs are unusually compact.

Authors:  Ajaykumar Gopal; Defne E Egecioglu; Aron M Yoffe; Avinoam Ben-Shaul; Ayala L N Rao; Charles M Knobler; William M Gelbart
Journal:  PLoS One       Date:  2014-09-04       Impact factor: 3.240
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  5 in total

1.  Large-Scale Synonymous Substitutions in Cucumber Mosaic Virus RNA 3 Facilitate Amino Acid Mutations in the Coat Protein.

Authors:  Tomofumi Mochizuki; Rie Ohara; Marilyn J Roossinck
Journal:  J Virol       Date:  2018-10-29       Impact factor: 5.103

2.  Virus self-assembly proceeds through contact-rich energy minima.

Authors:  Pedro Buzón; Sourav Maity; Panagiotis Christodoulis; Monique J Wiertsema; Steven Dunkelbarger; Christine Kim; Gijs J L Wuite; Adam Zlotnick; Wouter H Roos
Journal:  Sci Adv       Date:  2021-11-03       Impact factor: 14.136

3.  RNA Viral Vectors for Accelerating Plant Synthetic Biology.

Authors:  Arjun Khakhar; Daniel F Voytas
Journal:  Front Plant Sci       Date:  2021-06-23       Impact factor: 5.753

Review 4.  Physical virology: From virus self-assembly to particle mechanics.

Authors:  Pedro Buzón; Sourav Maity; Wouter H Roos
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-01-20

5.  Novel Fusari- and Toti-like Viruses, with Probable Different Origins, in the Plant Pathogenic Oomycete Globisporangiumultimum.

Authors:  Miki Fukunishi; Shinsaku Sasai; Motoaki Tojo; Tomofumi Mochizuki
Journal:  Viruses       Date:  2021-09-25       Impact factor: 5.048
  5 in total

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