Literature DB >> 25563934

Exhaustive data mining comparison of the effects of low doses of ionizing radiation, formaldehyde and dioxins.

Alexey Moskalev, Mikhail Shaposhnikov, Ekaterina Plyusnina, Sergey Plyusnin, Olga Shostal, Alexander Aliper, Alex Zhavoronkov.   

Abstract

BACKGROUND: Ionizing radiation in low doses is the ubiquitous environmental factor with harmful stochastic effects. Formaldehyde is one of the most reactive household and industrial pollutants. Dioxins are persistent organic pollutants and most potent synthetic poisons effective even at trace concentrations. Environmental pollutants are capable of altering the expression of a variety of genes. To identify the similarities and differences in the effects of low-dose ionizing radiation, formaldehyde and dioxin on gene expression, we performed the bioinformatic analysis of all available published data.
RESULTS: We found that that in addition to the common p53-, ATM- and MAPK-signaling stress response pathways, genes of cell cycle regulation and proinflammatory cytokines, the studied pollutants induce a variety of other molecular processes.
CONCLUSIONS: The observed patterns provide new insights into the mechanisms of the adverse effects associated with these pollutants. They can also be useful in the development of new bio-sensing methods for detection of pollutants in the environment and combating the deleterious effects.

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Year:  2014        PMID: 25563934      PMCID: PMC4303946          DOI: 10.1186/1471-2164-15-S12-S5

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  25 in total

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Authors:  Gang Feng; Pamela Shaw; Steven T Rosen; Simon M Lin; Warren A Kibbe
Journal:  Methods Mol Biol       Date:  2012

2.  BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.

Authors:  Steffen Durinck; Yves Moreau; Arek Kasprzyk; Sean Davis; Bart De Moor; Alvis Brazma; Wolfgang Huber
Journal:  Bioinformatics       Date:  2005-08-15       Impact factor: 6.937

3.  Pesticides reduce regional biodiversity of stream invertebrates.

Authors:  Mikhail A Beketov; Ben J Kefford; Ralf B Schäfer; Matthias Liess
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

Review 4.  Potential role of environmental genotoxic agents in diabetes mellitus and neurodegenerative diseases.

Authors:  D L Eizirik; P Spencer; G E Kisby
Journal:  Biochem Pharmacol       Date:  1996-06-28       Impact factor: 5.858

5.  Involvement of aryl hydrocarbon receptor in basal and 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced expression of target genes in primary human hepatocytes.

Authors:  Marc Le Vee; Elodie Jouan; Olivier Fardel
Journal:  Toxicol In Vitro       Date:  2010-07-07       Impact factor: 3.500

6.  Gene expression profiling in lung tissues from rats exposed to formaldehyde.

Authors:  Donggeun Sul; Hyunsook Kim; Eunha Oh; Sohee Phark; Eunkyung Cho; Seonyoung Choi; Hyung-Sik Kang; Eun-Mi Kim; Kwang-Woo Hwang; Woon-Won Jung
Journal:  Arch Toxicol       Date:  2007-02-07       Impact factor: 5.153

7.  The stress response resolution assay. II. Quantitative assessment of environmental agent/condition effects on cellular stress resolution outcomes in epithelium.

Authors:  Dale M Walker; Janice A Nicklas; Vernon E Walker
Journal:  Environ Mol Mutagen       Date:  2013-03-29       Impact factor: 3.216

8.  Gene expression profiles in human lymphocytes irradiated in vitro with low doses of gamma rays.

Authors:  Ana L Fachin; Stephano S Mello; Paula Sandrin-Garcia; Cristina M Junta; Eduardo A Donadi; Geraldo A S Passos; Elza T Sakamoto-Hojo
Journal:  Radiat Res       Date:  2007-12       Impact factor: 2.841

Review 9.  Genetics and epigenetics of aging and longevity.

Authors:  Alexey A Moskalev; Alexander M Aliper; Zeljka Smit-McBride; Anton Buzdin; Alex Zhavoronkov
Journal:  Cell Cycle       Date:  2014-03-06       Impact factor: 4.534

10.  Mining gene expression data for pollutants (dioxin, toluene, formaldehyde) and low dose of gamma-irradiation.

Authors:  Alexey Moskalev; Mikhail Shaposhnikov; Anastasia Snezhkina; Valeria Kogan; Ekaterina Plyusnina; Darya Peregudova; Nataliya Melnikova; Leonid Uroshlev; Sergey Mylnikov; Alexey Dmitriev; Sergey Plusnin; Peter Fedichev; Anna Kudryavtseva
Journal:  PLoS One       Date:  2014-01-24       Impact factor: 3.240

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  2 in total

1.  A comparison of the transcriptome of Drosophila melanogaster in response to entomopathogenic fungus, ionizing radiation, starvation and cold shock.

Authors:  Alexey Moskalev; Svetlana Zhikrivetskaya; George Krasnov; Mikhail Shaposhnikov; Ekaterina Proshkina; Dmitry Borisoglebsky; Anton Danilov; Darya Peregudova; Irina Sharapova; Eugenia Dobrovolskaya; Ilya Solovev; Nadezhda Zemskaya; Lyubov Shilova; Anastasia Snezhkina; Anna Kudryavtseva
Journal:  BMC Genomics       Date:  2015-12-16       Impact factor: 3.969

2.  Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster.

Authors:  Judit Salces-Ortiz; Carlos Vargas-Chavez; Lain Guio; Gabriel E Rech; Josefa González
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

  2 in total

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