Literature DB >> 25563804

Active site-directed proteomic probes for adenylation domains in nonribosomal peptide synthetases.

Sho Konno1, Fumihiro Ishikawa, Takehiro Suzuki, Naoshi Dohmae, Michael D Burkart, Hideaki Kakeya.   

Abstract

We describe a general strategy for selective chemical labeling of individual adenylation (A) domains in nonribosomal peptide synthetases (NRPSs) using active site-directed proteomic probes coupled to the 5'-O-N-(aminoacyl)sulfamoyladenosine (AMS) scaffold with a clickable benzophenone functionality. These proteomic tools can greatly facilitate the molecular identification, functional characterization, and profiling of virtually any kind of A domains of NRPS enzymes in complex biological systems.

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Year:  2015        PMID: 25563804      PMCID: PMC4795001          DOI: 10.1039/c4cc09412c

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  35 in total

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Authors:  D E Cane; C T Walsh
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Review 2.  Mechanism-based profiling of enzyme families.

Authors:  Michael J Evans; Benjamin F Cravatt
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 3.  Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

Authors:  Michael A Fischbach; Christopher T Walsh
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4.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

Authors:  Sebastian Bergmann; Julia Schümann; Kirstin Scherlach; Corinna Lange; Axel A Brakhage; Christian Hertweck
Journal:  Nat Chem Biol       Date:  2007-03-18       Impact factor: 15.040

5.  Molecular basis of cytochalasan biosynthesis in fungi: gene cluster analysis and evidence for the involvement of a PKS-NRPS hybrid synthase by RNA silencing.

Authors:  Julia Schümann; Christian Hertweck
Journal:  J Am Chem Soc       Date:  2007-07-18       Impact factor: 15.419

Review 6.  Strategies to unravel the function of orphan biosynthesis pathways: recent examples and future prospects.

Authors:  Harald Gross
Journal:  Appl Microbiol Biotechnol       Date:  2007-03-06       Impact factor: 4.813

7.  The ability of Aneurinibacillus migulanus (Bacillus brevis) to produce the antibiotic gramicidin S is correlated with phenotype variation.

Authors:  Marina Berditsch; Sergii Afonin; Anne S Ulrich
Journal:  Appl Environ Microbiol       Date:  2007-08-24       Impact factor: 4.792

8.  Small-molecule inhibition of siderophore biosynthesis in Mycobacterium tuberculosis and Yersinia pestis.

Authors:  Julian A Ferreras; Jae-Sang Ryu; Federico Di Lello; Derek S Tan; Luis E N Quadri
Journal:  Nat Chem Biol       Date:  2005-05-24       Impact factor: 15.040

9.  5'-O-[(N-acyl)sulfamoyl]adenosines as antitubercular agents that inhibit MbtA: an adenylation enzyme required for siderophore biosynthesis of the mycobactins.

Authors:  Chunhua Qiao; Amol Gupte; Helena I Boshoff; Daniel J Wilson; Eric M Bennett; Ravindranadh V Somu; Clifton E Barry; Courtney C Aldrich
Journal:  J Med Chem       Date:  2007-10-30       Impact factor: 7.446

10.  The iterative gramicidin s thioesterase catalyzes peptide ligation and cyclization.

Authors:  Katharina M Hoyer; Christoph Mahlert; Mohamed A Marahiel
Journal:  Chem Biol       Date:  2007-01
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  6 in total

Review 1.  Refining and expanding nonribosomal peptide synthetase function and mechanism.

Authors:  Matt McErlean; Jonathan Overbay; Steven Van Lanen
Journal:  J Ind Microbiol Biotechnol       Date:  2019-01-23       Impact factor: 3.346

2.  Activity-based protein profiling of a surfactin-producing nonribosomal peptide synthetase in Bacillus subtilis.

Authors:  Fumihiro Ishikawa; Rina Ohnishi; Chiharu Uchida; Genzoh Tanabe
Journal:  STAR Protoc       Date:  2022-06-13

Review 3.  Trapping interactions between catalytic domains and carrier proteins of modular biosynthetic enzymes with chemical probes.

Authors:  Andrew M Gulick; Courtney C Aldrich
Journal:  Nat Prod Rep       Date:  2018-11-14       Impact factor: 13.423

4.  Novel approaches in function-driven single-cell genomics.

Authors:  Devin F R Doud; Tanja Woyke
Journal:  FEMS Microbiol Rev       Date:  2017-07-01       Impact factor: 16.408

Review 5.  Mining for Microbial Gems: Integrating Proteomics in the Postgenomic Natural Product Discovery Pipeline.

Authors:  Chao Du; Gilles P van Wezel
Journal:  Proteomics       Date:  2018-06-10       Impact factor: 3.984

6.  Developing crosslinkers specific for epimerization domain in NRPS initiation modules to evaluate mechanism.

Authors:  Woojoo E Kim; Fumihiro Ishikawa; Rebecca N Re; Takehiro Suzuki; Naoshi Dohmae; Hideaki Kakeya; Genzoh Tanabe; Michael D Burkart
Journal:  RSC Chem Biol       Date:  2022-01-27
  6 in total

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