Literature DB >> 25562518

Programmable sensors of 5-hydroxymethylcytosine.

Grzegorz Kubik1, Sabrina Batke, Daniel Summerer.   

Abstract

5-Hydroxymethylcytosine (hmC), the sixth base of the mammalian genome, is increasingly recognized as an epigenetic mark with important biological functions. We report engineered, programmable transcription-activator-like effectors (TALEs) as the first DNA-binding receptor molecules that provide direct, individual selectivities for cytosine (C), 5-methylcytosine (mC), and hmC at user-defined DNA sequences. Given the wide applicability of TALEs for programmable targeting of DNA sequences in vitro and in vivo, this provides broad perspectives for epigenetic research.

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Year:  2015        PMID: 25562518     DOI: 10.1021/ja506022t

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Selective recognition of N4-methylcytosine in DNA by engineered transcription-activator-like effectors.

Authors:  Preeti Rathi; Sara Maurer; Daniel Summerer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

Review 2.  Harnessing natural DNA modifying activities for editing of the genome and epigenome.

Authors:  Jamie E DeNizio; Emily K Schutsky; Kiara N Berrios; Monica Yun Liu; Rahul M Kohli
Journal:  Curr Opin Chem Biol       Date:  2018-02-13       Impact factor: 8.822

Review 3.  The expanding scope and impact of epigenetic cytosine modifications.

Authors:  Monica Yun Liu; Jamie E DeNizio; Emily K Schutsky; Rahul M Kohli
Journal:  Curr Opin Chem Biol       Date:  2016-06-14       Impact factor: 8.822

4.  Designer Receptors for Nucleotide-Resolution Analysis of Genomic 5-Methylcytosine by Cellular Imaging.

Authors:  Álvaro Muñoz-López; Benjamin Buchmuller; Jan Wolffgramm; Anne Jung; Michelle Hussong; Julian Kanne; Michal R Schweiger; Daniel Summerer
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-07       Impact factor: 15.336

5.  Engineering DNA Backbone Interactions Results in TALE Scaffolds with Enhanced 5-Methylcytosine Selectivity.

Authors:  Preeti Rathi; Anna Witte; Daniel Summerer
Journal:  Sci Rep       Date:  2017-11-08       Impact factor: 4.379

6.  Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition.

Authors:  Yuan Zhang; Lulu Liu; Shengjie Guo; Jinghui Song; Chenxu Zhu; Zongwei Yue; Wensheng Wei; Chengqi Yi
Journal:  Nat Commun       Date:  2017-10-12       Impact factor: 14.919

7.  Overcoming conservation in TALE-DNA interactions: a minimal repeat scaffold enables selective recognition of an oxidized 5-methylcytosine.

Authors:  Sara Maurer; Benjamin Buchmuller; Christiane Ehrt; Julia Jasper; Oliver Koch; Daniel Summerer
Journal:  Chem Sci       Date:  2018-08-02       Impact factor: 9.825

8.  Engineered TALE Repeats for Enhanced Imaging-Based Analysis of Cellular 5-Methylcytosine.

Authors:  Álvaro Muñoz-López; Anne Jung; Benjamin Buchmuller; Jan Wolffgramm; Sara Maurer; Anna Witte; Daniel Summerer
Journal:  Chembiochem       Date:  2020-11-06       Impact factor: 3.164

9.  Targeting Epigenetic Mechanisms to Treat Alcohol Use Disorders (AUD).

Authors:  F David Rodriguez
Journal:  Curr Pharm Des       Date:  2021-10-05       Impact factor: 3.116

  9 in total

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