Literature DB >> 25561557

Flies expand the repertoire of protein structures that bind ice.

Koli Basu1, Laurie A Graham1, Robert L Campbell1, Peter L Davies2.   

Abstract

An antifreeze protein (AFP) with no known homologs has been identified in Lake Ontario midges (Chironomidae). The midge AFP is expressed as a family of isoforms at low levels in adults, which emerge from fresh water in spring before the threat of freezing temperatures has passed. The 9.1-kDa major isoform derived from a preproprotein precursor is glycosylated and has a 10-residue tandem repeating sequence xxCxGxYCxG, with regularly spaced cysteines, glycines, and tyrosines comprising one-half its 79 residues. Modeling and molecular dynamics predict a tightly wound left-handed solenoid fold in which the cysteines form a disulfide core to brace each of the eight 10-residue coils. The solenoid is reinforced by intrachain hydrogen bonds, side-chain salt bridges, and a row of seven stacked tyrosines on the hydrophobic side that forms the putative ice-binding site. A disulfide core is also a feature of the similar-sized beetle AFP that is a β-helix with seven 12-residue coils and a comparable circular dichroism spectrum. The midge and beetle AFPs are not homologous and their ice-binding sites are radically different, with the latter comprising two parallel arrays of outward-pointing threonines. However, their structural similarities is an amazing example of convergent evolution in different orders of insects to cope with change to a colder climate and provide confirmation about the physical features needed for a protein to bind ice.

Entities:  

Keywords:  antifreeze protein; convergent evolution; disulfide-rich; midge; solenoid

Mesh:

Substances:

Year:  2015        PMID: 25561557      PMCID: PMC4311821          DOI: 10.1073/pnas.1422272112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Crystallization and preliminary X-ray analysis of insect antifreeze protein from the beetle Tenebrio molitor.

Authors:  Y C Liou; P L Davies; Z Jia
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

2.  Folding and structural characterization of highly disulfide-bonded beetle antifreeze protein produced in bacteria.

Authors:  Y C Liou; M E Daley; L A Graham; C M Kay; V K Walker; B D Sykes; P L Davies
Journal:  Protein Expr Purif       Date:  2000-06       Impact factor: 1.650

3.  High-throughput mass spectrometric discovery of protein post-translational modifications.

Authors:  M R Wilkins; E Gasteiger; A A Gooley; B R Herbert; M P Molloy; P A Binz; K Ou; J C Sanchez; A Bairoch; K L Williams; D F Hochstrasser
Journal:  J Mol Biol       Date:  1999-06-11       Impact factor: 5.469

4.  The mechanism of the type III antifreeze protein action: a computational study.

Authors:  Cheng Yang; Kim A Sharp
Journal:  Biophys Chem       Date:  2004-04-01       Impact factor: 2.352

5.  The basis for hyperactivity of antifreeze proteins.

Authors:  Andrew J Scotter; Christopher B Marshall; Laurie A Graham; Jack A Gilbert; Christopher P Garnham; Peter L Davies
Journal:  Cryobiology       Date:  2006-08-02       Impact factor: 2.487

6.  Hyperactive antifreeze protein from beetles.

Authors:  L A Graham; Y C Liou; V K Walker; P L Davies
Journal:  Nature       Date:  1997-08-21       Impact factor: 49.962

7.  DNA sequence coding for an antifreeze protein precursor from winter flounder.

Authors:  P L Davies; A H Roach; C L Hew
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

8.  Dual function of the hydration layer around an antifreeze protein revealed by atomistic molecular dynamics simulations.

Authors:  David R Nutt; Jeremy C Smith
Journal:  J Am Chem Soc       Date:  2008-09-06       Impact factor: 15.419

9.  An antifreeze protein folds with an interior network of more than 400 semi-clathrate waters.

Authors:  Tianjun Sun; Feng-Hsu Lin; Robert L Campbell; John S Allingham; Peter L Davies
Journal:  Science       Date:  2014-02-14       Impact factor: 47.728

10.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10
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  9 in total

1.  Identification of Plant Ice-binding Proteins Through Assessment of Ice-recrystallization Inhibition and Isolation Using Ice-affinity Purification.

Authors:  Melissa Bredow; Heather E Tomalty; Virginia K Walker
Journal:  J Vis Exp       Date:  2017-05-05       Impact factor: 1.355

Review 2.  Modeling repetitive, non-globular proteins.

Authors:  Koli Basu; Robert L Campbell; Shuaiqi Guo; Tianjun Sun; Peter L Davies
Journal:  Protein Sci       Date:  2016-03-16       Impact factor: 6.725

3.  Microfluidic Cold-Finger Device for the Investigation of Ice-Binding Proteins.

Authors:  Lotem Haleva; Yeliz Celik; Maya Bar-Dolev; Natalya Pertaya-Braun; Avigail Kaner; Peter L Davies; Ido Braslavsky
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

4.  Origins of De Novo Genes in Human and Chimpanzee.

Authors:  Jorge Ruiz-Orera; Jessica Hernandez-Rodriguez; Cristina Chiva; Eduard Sabidó; Ivanela Kondova; Ronald Bontrop; Tomàs Marqués-Bonet; M Mar Albà
Journal:  PLoS Genet       Date:  2015-12-31       Impact factor: 5.917

Review 5.  From ice-binding proteins to bio-inspired antifreeze materials.

Authors:  I K Voets
Journal:  Soft Matter       Date:  2017-07-19       Impact factor: 3.679

6.  Concentration-dependent oligomerization of an alpha-helical antifreeze polypeptide makes it hyperactive.

Authors:  Sheikh Mahatabuddin; Yuichi Hanada; Yoshiyuki Nishimiya; Ai Miura; Hidemasa Kondo; Peter L Davies; Sakae Tsuda
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

7.  Water-organizing motif continuity is critical for potent ice nucleation protein activity.

Authors:  Akalabya Bissoyi; Lukas Eickhoff; Naama Reicher; Jordan Forbes; Thomas Hansen; Christopher G Bon; Virginia K Walker; Thomas Koop; Yinon Rudich; Ido Braslavsky; Peter L Davies
Journal:  Nat Commun       Date:  2022-08-26       Impact factor: 17.694

8.  Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae.

Authors:  Thomas Badet; Rémi Peyraud; Sylvain Raffaele
Journal:  Front Plant Sci       Date:  2015-09-24       Impact factor: 5.753

9.  New Cysteine-Rich Ice-Binding Protein Secreted from Antarctic Microalga, Chloromonas sp.

Authors:  Woongsic Jung; Robert L Campbell; Yunho Gwak; Jong Im Kim; Peter L Davies; EonSeon Jin
Journal:  PLoS One       Date:  2016-04-20       Impact factor: 3.240

  9 in total

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