Literature DB >> 25559091

Protective variant for hippocampal atrophy identified by whole exome sequencing.

Kwangsik Nho1, Sungeun Kim, Shannon L Risacher, Li Shen, Jason J Corneveaux, Shanker Swaminathan, Hai Lin, Vijay K Ramanan, Yunlong Liu, Tatiana M Foroud, Mark H Inlow, Ashley L Siniard, Rebecca A Reiman, Paul S Aisen, Ronald C Petersen, Robert C Green, Clifford R Jack, Michael W Weiner, Clinton T Baldwin, Kathryn L Lunetta, Lindsay A Farrer, Simon J Furney, Simon Lovestone, Andrew Simmons, Patrizia Mecocci, Bruno Vellas, Magda Tsolaki, Iwona Kloszewska, Hilkka Soininen, Brenna C McDonald, Martin R Farlow, Bernardino Ghetti, Matthew J Huentelman, Andrew J Saykin.   

Abstract

We used whole-exome sequencing to identify variants other than APOE associated with the rate of hippocampal atrophy in amnestic mild cognitive impairment. An in-silico predicted missense variant in REST (rs3796529) was found exclusively in subjects with slow hippocampal volume loss and validated using unbiased whole-brain analysis and meta-analysis across 5 independent cohorts. REST is a master regulator of neurogenesis and neuronal differentiation that has not been previously implicated in Alzheimer's disease. These findings nominate REST and its functional pathways as protective and illustrate the potential of combining next-generation sequencing with neuroimaging to discover novel disease mechanisms and potential therapeutic targets.
© 2015 American Neurological Association.

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Year:  2015        PMID: 25559091      PMCID: PMC4387567          DOI: 10.1002/ana.24349

Source DB:  PubMed          Journal:  Ann Neurol        ISSN: 0364-5134            Impact factor:   10.422


  19 in total

1.  Neuronal target genes of the neuron-restrictive silencer factor in neurospheres derived from fetuses with Down's syndrome: a gene expression study.

Authors:  Sabine Bahn; Michael Mimmack; Margaret Ryan; Maeve A Caldwell; Eric Jauniaux; Michael Starkey; Clive N Svendsen; Piers Emson
Journal:  Lancet       Date:  2002-01-26       Impact factor: 79.321

2.  Longitudinal MRI atrophy biomarkers: relationship to conversion in the ADNI cohort.

Authors:  Shannon L Risacher; Li Shen; John D West; Sungeun Kim; Brenna C McDonald; Laurel A Beckett; Danielle J Harvey; Clifford R Jack; Michael W Weiner; Andrew J Saykin
Journal:  Neurobiol Aging       Date:  2010-08       Impact factor: 4.673

Review 3.  The role of REST in transcriptional and epigenetic dysregulation in Huntington's disease.

Authors:  Noel J Buckley; Rory Johnson; Chiara Zuccato; Angela Bithell; Elena Cattaneo
Journal:  Neurobiol Dis       Date:  2010-02-17       Impact factor: 5.996

Review 4.  Unified univariate and multivariate random field theory.

Authors:  Keith J Worsley; Jonathan E Taylor; Francesco Tomaiuolo; Jason Lerch
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

Review 5.  Alzheimer's disease.

Authors:  Henry W Querfurth; Frank M LaFerla
Journal:  N Engl J Med       Date:  2010-01-28       Impact factor: 91.245

6.  MR determination of hippocampal volume: comparison of three methods.

Authors:  D Hasboun; M Chantôme; A Zouaoui; M Sahel; M Deladoeuille; N Sourour; M Duyme; M Baulac; C Marsault; D Dormont
Journal:  AJNR Am J Neuroradiol       Date:  1996 Jun-Jul       Impact factor: 3.825

7.  Cortical surface-based analysis. I. Segmentation and surface reconstruction.

Authors:  A M Dale; B Fischl; M I Sereno
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

8.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

9.  ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.

Authors:  Kai Wang; Mingyao Li; Hakon Hakonarson
Journal:  Nucleic Acids Res       Date:  2010-07-03       Impact factor: 16.971

10.  Role of genes and environments for explaining Alzheimer disease.

Authors:  Margaret Gatz; Chandra A Reynolds; Laura Fratiglioni; Boo Johansson; James A Mortimer; Stig Berg; Amy Fiske; Nancy L Pedersen
Journal:  Arch Gen Psychiatry       Date:  2006-02
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  33 in total

1.  Reply.

Authors:  Kwangsik Nho; Andrew J Saykin
Journal:  Ann Neurol       Date:  2016-01-18       Impact factor: 10.422

2.  Adult neurogenesis and neurodegenerative diseases: A systems biology perspective.

Authors:  Emrin Horgusluoglu; Kelly Nudelman; Kwangsik Nho; Andrew J Saykin
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2016-02-16       Impact factor: 3.568

3.  A Longitudinal Imaging Genetics Study of Neuroanatomical Asymmetry in Alzheimer's Disease.

Authors:  Christian Wachinger; Kwangsik Nho; Andrew J Saykin; Martin Reuter; Anna Rieckmann
Journal:  Biol Psychiatry       Date:  2018-05-09       Impact factor: 13.382

4.  Reply: To PMID 25559091.

Authors:  Kwangsik Nho; Andrew J Saykin
Journal:  Ann Neurol       Date:  2015-08-25       Impact factor: 10.422

5.  Genomics and CSF analyses implicate thyroid hormone in hippocampal sclerosis of aging.

Authors:  Peter T Nelson; Yuriko Katsumata; Kwangsik Nho; Sergey C Artiushin; Gregory A Jicha; Wang-Xia Wang; Erin L Abner; Andrew J Saykin; Walter A Kukull; David W Fardo
Journal:  Acta Neuropathol       Date:  2016-11-04       Impact factor: 17.088

Review 6.  Clinical workout for the early detection of cognitive decline and dementia.

Authors:  M Tsolaki
Journal:  Eur J Clin Nutr       Date:  2014-10-01       Impact factor: 4.016

Review 7.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

8.  REST-Dependent Presynaptic Homeostasis Induced by Chronic Neuronal Hyperactivity.

Authors:  F Pecoraro-Bisogni; Gabriele Lignani; A Contestabile; E Castroflorio; D Pozzi; A Rocchi; C Prestigio; M Orlando; P Valente; M Massacesi; F Benfenati; Pietro Baldelli
Journal:  Mol Neurobiol       Date:  2017-08-07       Impact factor: 5.590

9.  Reply: To PMID 25559091.

Authors:  Kwangsik Nho; Lindsay A Farrer; Andrew J Saykin
Journal:  Ann Neurol       Date:  2015-09-22       Impact factor: 10.422

10.  Genome-wide transcriptome analysis identifies novel dysregulated genes implicated in Alzheimer's pathology.

Authors:  Kwangsik Nho; Kelly Nudelman; Mariet Allen; Angela Hodges; Sungeun Kim; Shannon L Risacher; Liana G Apostolova; Kuang Lin; Katie Lunnon; Xue Wang; Jeremy D Burgess; Nilüfer Ertekin-Taner; Ronald C Petersen; Lisu Wang; Zhenhao Qi; Aiqing He; Isaac Neuhaus; Vishal Patel; Tatiana Foroud; Kelley M Faber; Simon Lovestone; Andrew Simmons; Michael W Weiner; Andrew J Saykin
Journal:  Alzheimers Dement       Date:  2020-08-05       Impact factor: 21.566

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