Literature DB >> 25553030

Crystal structure of 3-{1-[(1-allyl-1H-indazol-6-yl)amino]-ethyl-idene}-6-methyl-2H-pyran-2,4(3H)-dione.

Mohamed El Ghozlani1, El Mostapha Rakib1, Ahmed Gamouh1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

In the title compound, C18H17N3O3, the dihedral angle between the planes of the n class="Chemical">indazole ring system [maximum deviation = 0.012 (1) Å] and the pyran-2,4-dione ring is 54.03 (6)°. An intra-molecular N-H⋯O hydrogen bond closes an S(6) ring. The same H atom also participates in an inter-molecular N-H⋯O hydrogen bond, which generates an inversion dimer. The dimers are linked by weak C-H⋯O contacts, thereby forming a three-dimensional network.

Entities:  

Keywords:  crystal structure; indazole derivatives; pharmacological activity; pyran-2,4-dione

Year:  2014        PMID: 25553030      PMCID: PMC4257434          DOI: 10.1107/S1600536814024520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological activities of indazole derivatives, see: Cerecetto et al. (2005 ▶); Jennings & Tennant (2007 ▶); Sun et al. (1997 ▶). For innovative methods in their synthesis, see: Paul et al. (2014 ▶).

Experimental

Crystal data

C18H17N3O3 M = 323.35 Triclinic, a = 6.7708 (11) Å b = 10.5761 (17) Å c = 11.9643 (17) Å α = 88.239 (9)° β = 81.123 (9)° γ = 79.140 (9)° V = 831.3 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.39 × 0.34 × 0.29 mm

Data collection

Bruker X8 APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.685, T max = 0.746 11752 measured reflections 3929 independent reflections 2930 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.131 S = 1.04 3929 reflections 217 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814024520/hb7311sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814024520/hb7311Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814024520/hb7311Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814024520/hb7311fig1.tif Mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. N A . DOI: 10.1107/S1600536814024520/hb7311fig2.tif Partial crystal packing for the title compound showing N3—H3N⋯O3, C6—H6⋯O1 and C8—H8A⋯O1 hydrogen bonds as dashed lines. CCDC reference: 1033266 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H17N3O3Z = 2
Mr = 323.35F(000) = 340
Triclinic, P1Dx = 1.292 Mg m3
Hall symbol: -P 1Melting point: 392 K
a = 6.7708 (11) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.5761 (17) ÅCell parameters from 3929 reflections
c = 11.9643 (17) Åθ = 2.6–27.9°
α = 88.239 (9)°µ = 0.09 mm1
β = 81.123 (9)°T = 296 K
γ = 79.140 (9)°Block, yellow
V = 831.3 (2) Å30.39 × 0.34 × 0.29 mm
Bruker X8 APEX CCD diffractometer3929 independent reflections
Radiation source: fine-focus sealed tube2930 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 27.9°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.685, Tmax = 0.746k = −12→13
11752 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0634P)2 + 0.1441P] where P = (Fo2 + 2Fc2)/3
3929 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C1−0.2126 (2)0.27561 (17)0.19077 (14)0.0535 (4)
H1−0.33150.24950.17920.064*
C2−0.1187 (2)0.24555 (13)0.28909 (11)0.0394 (3)
C3−0.1571 (2)0.17674 (15)0.38933 (12)0.0453 (4)
H3−0.27040.13750.40400.054*
C4−0.0230 (2)0.16880 (14)0.46546 (11)0.0419 (3)
H4−0.04540.12300.53240.050*
C50.14799 (19)0.22876 (12)0.44391 (10)0.0327 (3)
C60.1916 (2)0.29707 (12)0.34631 (10)0.0347 (3)
H60.30540.33580.33230.042*
C70.0533 (2)0.30446 (12)0.26930 (10)0.0352 (3)
C80.2094 (3)0.42381 (18)0.10121 (14)0.0664 (5)
H8A0.28180.45940.15290.080*
H8B0.14640.49430.05720.080*
C90.3587 (4)0.3318 (3)0.02309 (16)0.0820 (7)
H90.46070.3652−0.02270.098*
C100.3598 (3)0.2112 (3)0.01307 (18)0.0866 (7)
H10A0.26090.17330.05700.104*
H10B0.45950.1616−0.03820.104*
C110.3460 (2)0.29146 (12)0.58397 (10)0.0349 (3)
C120.4993 (2)0.24657 (12)0.65330 (10)0.0341 (3)
C130.5675 (2)0.11088 (13)0.66967 (10)0.0359 (3)
C140.7230 (2)0.07406 (14)0.74087 (11)0.0429 (3)
H140.7646−0.01260.75680.051*
C150.8078 (2)0.16072 (16)0.78399 (12)0.0474 (4)
C160.5936 (3)0.33761 (15)0.70210 (12)0.0482 (4)
C170.2422 (3)0.42837 (15)0.57937 (16)0.0671 (6)
H17A0.11400.43260.55320.101*
H17B0.32600.47530.52840.101*
H17C0.21970.46550.65350.101*
C180.9761 (3)0.1362 (2)0.85373 (18)0.0806 (6)
H18A0.93160.17960.92500.121*
H18C1.09180.16790.81450.121*
H18B1.01330.04540.86650.121*
N10.0511 (2)0.36448 (12)0.16653 (10)0.0472 (3)
N2−0.1112 (2)0.34456 (14)0.11844 (11)0.0574 (4)
N30.28794 (17)0.20639 (10)0.52426 (9)0.0350 (3)
H3N0.34430.12350.53790.042*
O10.5633 (3)0.45366 (11)0.69316 (13)0.0832 (5)
O20.74794 (18)0.28942 (11)0.76619 (9)0.0567 (3)
O30.50060 (18)0.02513 (9)0.62444 (9)0.0538 (3)
U11U22U33U12U13U23
C10.0429 (9)0.0691 (11)0.0520 (9)−0.0058 (8)−0.0233 (7)−0.0044 (8)
C20.0330 (7)0.0437 (8)0.0413 (7)−0.0003 (6)−0.0124 (5)−0.0057 (6)
C30.0325 (7)0.0595 (9)0.0459 (8)−0.0136 (6)−0.0057 (6)−0.0009 (7)
C40.0404 (8)0.0494 (8)0.0360 (7)−0.0096 (6)−0.0055 (6)0.0045 (6)
C50.0351 (7)0.0320 (6)0.0313 (6)−0.0016 (5)−0.0108 (5)−0.0025 (5)
C60.0392 (7)0.0317 (6)0.0362 (6)−0.0083 (5)−0.0128 (5)0.0005 (5)
C70.0413 (7)0.0306 (6)0.0340 (6)−0.0015 (5)−0.0130 (5)−0.0012 (5)
C80.1033 (15)0.0663 (11)0.0490 (9)−0.0470 (11)−0.0384 (10)0.0265 (8)
C90.0885 (15)0.130 (2)0.0434 (9)−0.0647 (15)−0.0069 (10)0.0047 (11)
C100.0708 (14)0.125 (2)0.0651 (12)−0.0253 (14)0.0001 (10)−0.0205 (13)
C110.0409 (7)0.0328 (7)0.0307 (6)−0.0022 (5)−0.0090 (5)−0.0023 (5)
C120.0401 (7)0.0347 (7)0.0288 (6)−0.0061 (5)−0.0099 (5)−0.0020 (5)
C130.0405 (7)0.0375 (7)0.0298 (6)−0.0037 (6)−0.0102 (5)−0.0011 (5)
C140.0483 (8)0.0446 (8)0.0344 (6)0.0024 (6)−0.0160 (6)0.0005 (6)
C150.0472 (9)0.0594 (9)0.0366 (7)−0.0040 (7)−0.0163 (6)−0.0006 (6)
C160.0641 (10)0.0441 (8)0.0438 (8)−0.0155 (7)−0.0247 (7)0.0010 (6)
C170.0909 (14)0.0388 (8)0.0736 (11)0.0151 (8)−0.0484 (10)−0.0163 (8)
C180.0723 (13)0.1046 (16)0.0736 (12)−0.0078 (12)−0.0479 (11)−0.0039 (11)
N10.0629 (8)0.0466 (7)0.0385 (6)−0.0134 (6)−0.0258 (6)0.0080 (5)
N20.0622 (9)0.0659 (9)0.0493 (7)−0.0067 (7)−0.0324 (7)0.0040 (6)
N30.0408 (6)0.0308 (5)0.0347 (5)−0.0014 (5)−0.0159 (5)0.0006 (4)
O10.1312 (13)0.0405 (7)0.1001 (10)−0.0286 (7)−0.0724 (10)0.0073 (6)
O20.0669 (7)0.0579 (7)0.0567 (6)−0.0191 (6)−0.0349 (6)−0.0013 (5)
O30.0747 (8)0.0333 (5)0.0610 (7)−0.0055 (5)−0.0394 (6)−0.0006 (4)
C1—N21.311 (2)C11—N31.3166 (16)
C1—C21.4215 (19)C11—C121.4309 (18)
C1—H10.9300C11—C171.4890 (19)
C2—C31.399 (2)C12—C161.4339 (18)
C2—C71.407 (2)C12—C131.4394 (18)
C3—C41.3723 (19)C13—O31.2575 (16)
C3—H30.9300C13—C141.4447 (18)
C4—C51.408 (2)C14—C151.325 (2)
C4—H40.9300C14—H140.9300
C5—C61.3765 (18)C15—O21.3649 (19)
C5—N31.4355 (15)C15—C181.494 (2)
C6—C71.4022 (17)C16—O11.2099 (19)
C6—H60.9300C16—O21.4010 (18)
C7—N11.3672 (17)C17—H17A0.9600
C8—N11.456 (2)C17—H17B0.9600
C8—C91.495 (3)C17—H17C0.9600
C8—H8A0.9700C18—H18A0.9600
C8—H8B0.9700C18—H18C0.9600
C9—C101.284 (3)C18—H18B0.9600
C9—H90.9300N1—N21.3684 (18)
C10—H10A0.9300N3—H3N0.9090
C10—H10B0.9300
N2—C1—C2111.83 (14)C11—C12—C16119.56 (12)
N2—C1—H1124.1C11—C12—C13120.72 (11)
C2—C1—H1124.1C16—C12—C13119.64 (12)
C3—C2—C7119.78 (12)O3—C13—C12123.39 (12)
C3—C2—C1136.29 (14)O3—C13—C14119.55 (12)
C7—C2—C1103.93 (13)C12—C13—C14117.06 (12)
C4—C3—C2118.11 (13)C15—C14—C13121.62 (13)
C4—C3—H3120.9C15—C14—H14119.2
C2—C3—H3120.9C13—C14—H14119.2
C3—C4—C5121.11 (13)C14—C15—O2121.58 (13)
C3—C4—H4119.4C14—C15—C18127.34 (16)
C5—C4—H4119.4O2—C15—C18111.07 (14)
C6—C5—C4122.61 (12)O1—C16—O2113.34 (13)
C6—C5—N3120.24 (12)O1—C16—C12128.87 (14)
C4—C5—N3116.93 (11)O2—C16—C12117.75 (13)
C5—C6—C7115.68 (12)C11—C17—H17A109.5
C5—C6—H6122.2C11—C17—H17B109.5
C7—C6—H6122.2H17A—C17—H17B109.5
N1—C7—C6130.43 (13)C11—C17—H17C109.5
N1—C7—C2106.87 (12)H17A—C17—H17C109.5
C6—C7—C2122.70 (12)H17B—C17—H17C109.5
N1—C8—C9113.14 (15)C15—C18—H18A109.5
N1—C8—H8A109.0C15—C18—H18C109.5
C9—C8—H8A109.0H18A—C18—H18C109.5
N1—C8—H8B109.0C15—C18—H18B109.5
C9—C8—H8B109.0H18A—C18—H18B109.5
H8A—C8—H8B107.8H18C—C18—H18B109.5
C10—C9—C8126.33 (19)C7—N1—N2110.85 (13)
C10—C9—H9116.8C7—N1—C8128.13 (13)
C8—C9—H9116.8N2—N1—C8120.20 (12)
C9—C10—H10A120.0C1—N2—N1106.50 (12)
C9—C10—H10B120.0C11—N3—C5128.38 (11)
H10A—C10—H10B120.0C11—N3—H3N113.9
N3—C11—C12118.25 (11)C5—N3—H3N117.7
N3—C11—C17118.15 (12)C15—O2—C16122.25 (11)
C12—C11—C17123.55 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O30.911.772.5567 (15)143
N3—H3N···O3i0.912.513.0612 (16)120
C6—H6···O1ii0.932.543.3554 (19)146
C8—H8A···O1ii0.972.533.495 (2)173
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3NO30.911.772.5567(15)143
N3H3NO3i 0.912.513.0612(16)120
C6H6O1ii 0.932.543.3554(19)146
C8H8AO1ii 0.972.533.495(2)173

Symmetry codes: (i) ; (ii) .

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