Literature DB >> 25553029

Crystal structure of 4-(3-carb-oxy-pro-pan-amido)-2-hy-droxy-benzoic acid mono-hydrate.

Muhammad Nawaz Tahir1, Muhammad Naeem Ahmed2, Arshad Farooq Butt3, Hazoor Ahmad Shad4.   

Abstract

In the title hydrate, C11H11NO6·H2O, the organic mol-ecule is approximately planar (r.m.s. deviation for the non-H atoms = 0.129 Å) and an intra-molecular O-H⋯O hydrogen bond closes an S(6) ring. In the crystal, the benzoic acid group participates in an O-H⋯O hydrogen bond to the water mol-ecule and accepts a similar bond from another water mol-ecule. The other -CO2H group forms a carb-oxy-lic acid inversion dimer, thereby forming an R 2 (2)(8) loop. These bonds, along with N-H⋯O and C-H⋯O inter-actions, generate a three-dimensional network.

Entities:  

Keywords:  2-hy­droxy­benzoic acid; crystal structure; hydrate; hydrogen bonding

Year:  2014        PMID: 25553029      PMCID: PMC4257440          DOI: 10.1107/S1600536814024581

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gowda et al. (2009 ▶, 2011 ▶); Jia et al. (2012 ▶); Saraswathi et al. (2011 ▶).

Experimental

Crystal data

C11H11NO6·H2O M = 271.22 Monoclinic, a = 25.2516 (19) Å b = 8.4656 (5) Å c = 12.4732 (10) Å β = 117.446 (3)° V = 2366.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 296 K 0.28 × 0.24 × 0.16 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.964, T max = 0.983 9402 measured reflections 2556 independent reflections 1738 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.122 S = 1.02 2556 reflections 181 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814024581/hb7310sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814024581/hb7310Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814024581/hb7310Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814024581/hb7310fig1.tif View of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. PLATON . DOI: 10.1107/S1600536814024581/hb7310fig2.tif The partial packing (PLATON; Spek, 2009), which shows that mol­ecules form dimers which are inter­linked to three-dimensional polymeric network. CCDC reference: 1033346 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H11NO6·H2OF(000) = 1136
Mr = 271.22Dx = 1.523 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 25.2516 (19) ÅCell parameters from 1738 reflections
b = 8.4656 (5) Åθ = 2.6–27.0°
c = 12.4732 (10) ŵ = 0.13 mm1
β = 117.446 (3)°T = 296 K
V = 2366.3 (3) Å3Plate, colourless
Z = 80.28 × 0.24 × 0.16 mm
Bruker Kappa APEXII CCD diffractometer2556 independent reflections
Radiation source: fine-focus sealed tube1738 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
Detector resolution: 7.80 pixels mm-1θmax = 27.0°, θmin = 2.6°
ω scansh = −32→32
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.964, Tmax = 0.983l = −15→15
9402 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0545P)2 + 0.9039P] where P = (Fo2 + 2Fc2)/3
2556 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.45356 (6)−0.2827 (2)0.78347 (15)0.0561 (5)
H10.4765−0.34040.83790.084*
O20.39232 (6)−0.35291 (17)0.85809 (13)0.0452 (4)
O30.28556 (6)−0.22986 (16)0.76254 (12)0.0378 (4)
H30.3133−0.28450.80980.057*
O40.14489 (7)0.0630 (2)0.42736 (15)0.0607 (5)
O5−0.01362 (6)0.3599 (2)0.08989 (17)0.0658 (6)
H5−0.02870.42490.03520.099*
O60.06897 (6)0.43838 (18)0.08601 (14)0.0494 (4)
N10.22758 (6)0.07905 (19)0.40306 (14)0.0340 (4)
H1A0.24110.11920.35710.041*
C10.40152 (9)−0.2813 (2)0.78284 (18)0.0347 (5)
C20.35583 (8)−0.1892 (2)0.68505 (17)0.0301 (4)
C30.29976 (8)−0.1667 (2)0.67907 (16)0.0281 (4)
C40.25635 (8)−0.0780 (2)0.58744 (16)0.0292 (4)
H40.2194−0.06240.58520.035*
C50.26845 (8)−0.0126 (2)0.49906 (17)0.0288 (4)
C60.32402 (9)−0.0373 (2)0.50317 (19)0.0378 (5)
H60.33200.00510.44330.045*
C70.36652 (9)−0.1230 (2)0.59436 (19)0.0383 (5)
H70.4035−0.13790.59640.046*
C80.17030 (9)0.1135 (2)0.37201 (19)0.0364 (5)
C90.13998 (9)0.2187 (2)0.26307 (18)0.0381 (5)
H9A0.14330.17170.19550.046*
H9B0.16000.32030.28000.046*
C100.07507 (9)0.2429 (2)0.22904 (19)0.0412 (5)
H10A0.05480.14170.20650.049*
H10B0.07200.28080.29930.049*
C110.04396 (9)0.3559 (2)0.12818 (18)0.0367 (5)
O70.54172 (8)−0.4497 (2)0.94112 (17)0.0565 (5)
H7A0.5638 (13)−0.464 (3)0.914 (3)0.085*
H7B0.5480 (14)−0.501 (4)0.991 (3)0.085*
U11U22U33U12U13U23
O10.0331 (8)0.0803 (12)0.0558 (11)0.0224 (8)0.0212 (8)0.0336 (9)
O20.0410 (9)0.0564 (9)0.0380 (9)0.0118 (7)0.0181 (7)0.0180 (7)
O30.0376 (8)0.0478 (8)0.0336 (8)0.0106 (7)0.0213 (7)0.0120 (6)
O40.0362 (9)0.0880 (12)0.0641 (11)0.0175 (8)0.0284 (8)0.0389 (10)
O50.0295 (9)0.0899 (14)0.0719 (13)0.0136 (8)0.0181 (9)0.0463 (10)
O60.0346 (8)0.0602 (10)0.0530 (10)0.0090 (7)0.0199 (8)0.0229 (8)
N10.0254 (9)0.0424 (9)0.0339 (10)0.0059 (7)0.0133 (8)0.0122 (8)
C10.0309 (11)0.0383 (11)0.0343 (11)0.0058 (9)0.0147 (9)0.0034 (9)
C20.0281 (10)0.0325 (10)0.0283 (10)0.0038 (8)0.0118 (8)0.0032 (8)
C30.0316 (10)0.0289 (9)0.0257 (10)−0.0002 (8)0.0148 (8)−0.0014 (8)
C40.0235 (10)0.0335 (10)0.0313 (11)0.0024 (8)0.0133 (9)−0.0013 (8)
C50.0255 (10)0.0290 (10)0.0294 (10)0.0022 (8)0.0105 (8)0.0018 (8)
C60.0328 (11)0.0473 (12)0.0385 (12)0.0067 (9)0.0207 (10)0.0135 (10)
C70.0295 (11)0.0479 (12)0.0421 (12)0.0088 (9)0.0203 (10)0.0128 (10)
C80.0335 (11)0.0388 (11)0.0385 (12)0.0020 (9)0.0180 (10)0.0058 (9)
C90.0335 (11)0.0411 (11)0.0379 (12)0.0055 (9)0.0149 (10)0.0085 (9)
C100.0325 (11)0.0482 (13)0.0416 (12)0.0067 (10)0.0159 (10)0.0106 (10)
C110.0295 (11)0.0424 (12)0.0371 (12)0.0045 (9)0.0143 (10)0.0039 (9)
O70.0420 (10)0.0775 (13)0.0557 (11)0.0260 (9)0.0273 (9)0.0329 (9)
O1—C11.310 (2)C4—C51.388 (3)
O1—H10.8200C4—H40.9300
O2—C11.226 (2)C5—C61.396 (3)
O3—C31.357 (2)C6—C71.359 (3)
O3—H30.8200C6—H60.9300
O4—C81.217 (2)C7—H70.9300
O5—C111.305 (2)C8—C91.505 (3)
O5—H50.8200C9—C101.506 (3)
O6—C111.212 (2)C9—H9A0.9700
N1—C81.346 (2)C9—H9B0.9700
N1—C51.400 (2)C10—C111.485 (3)
N1—H1A0.8600C10—H10A0.9700
C1—C21.459 (3)C10—H10B0.9700
C2—C71.396 (3)O7—H7A0.78 (3)
C2—C31.396 (3)O7—H7B0.72 (3)
C3—C41.385 (3)
C1—O1—H1109.5C5—C6—H6119.9
C3—O3—H3109.5C6—C7—C2121.31 (18)
C11—O5—H5109.5C6—C7—H7119.3
C8—N1—C5129.57 (16)C2—C7—H7119.3
C8—N1—H1A115.2O4—C8—N1122.57 (19)
C5—N1—H1A115.2O4—C8—C9122.59 (18)
O2—C1—O1122.28 (18)N1—C8—C9114.84 (17)
O2—C1—C2123.24 (18)C8—C9—C10111.69 (17)
O1—C1—C2114.48 (17)C8—C9—H9A109.3
C7—C2—C3118.18 (17)C10—C9—H9A109.3
C7—C2—C1121.20 (17)C8—C9—H9B109.3
C3—C2—C1120.62 (17)C10—C9—H9B109.3
O3—C3—C4117.26 (16)H9A—C9—H9B107.9
O3—C3—C2121.68 (16)C11—C10—C9114.12 (17)
C4—C3—C2121.05 (16)C11—C10—H10A108.7
C3—C4—C5119.45 (17)C9—C10—H10A108.7
C3—C4—H4120.3C11—C10—H10B108.7
C5—C4—H4120.3C9—C10—H10B108.7
C4—C5—C6119.77 (17)H10A—C10—H10B107.6
C4—C5—N1123.71 (16)O6—C11—O5122.79 (19)
C6—C5—N1116.52 (17)O6—C11—C10124.11 (18)
C7—C6—C5120.22 (18)O5—C11—C10113.09 (18)
C7—C6—H6119.9H7A—O7—H7B111 (3)
O2—C1—C2—C7−173.4 (2)C8—N1—C5—C6175.30 (19)
O1—C1—C2—C76.1 (3)C4—C5—C6—C7−1.0 (3)
O2—C1—C2—C35.8 (3)N1—C5—C6—C7179.09 (18)
O1—C1—C2—C3−174.74 (18)C5—C6—C7—C20.5 (3)
C7—C2—C3—O3178.72 (17)C3—C2—C7—C60.8 (3)
C1—C2—C3—O3−0.5 (3)C1—C2—C7—C6180.0 (2)
C7—C2—C3—C4−1.6 (3)C5—N1—C8—O4−1.2 (4)
C1—C2—C3—C4179.23 (17)C5—N1—C8—C9179.15 (18)
O3—C3—C4—C5−179.20 (16)O4—C8—C9—C10−3.5 (3)
C2—C3—C4—C51.1 (3)N1—C8—C9—C10176.14 (17)
C3—C4—C5—C60.2 (3)C8—C9—C10—C11175.35 (17)
C3—C4—C5—N1−179.88 (17)C9—C10—C11—O6−9.3 (3)
C8—N1—C5—C4−4.6 (3)C9—C10—C11—O5171.72 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O70.821.812.605 (2)163
O3—H3···O20.821.892.6099 (19)146
O5—H5···O6i0.821.802.618 (2)174
N1—H1A···O3ii0.862.183.035 (2)173
C10—H10B···O5iii0.972.533.424 (3)153
O7—H7A···O4iv0.78 (3)2.15 (3)2.854 (2)151 (3)
O7—H7B···O2v0.72 (3)2.17 (3)2.827 (2)152 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1O70.821.812.605(2)163
O3H3O20.821.892.6099(19)146
O5H5O6i 0.821.802.618(2)174
N1H1AO3ii 0.862.183.035(2)173
C10H10BO5iii 0.972.533.424(3)153
O7H7AO4iv 0.78(3)2.15(3)2.854(2)151(3)
O7H7BO2v 0.72(3)2.17(3)2.827(2)152(3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11

3.  N-Phenyl-succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

4.  N-(4-Methyl-phen-yl)succinamic acid.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

5.  4-[(2-Carb-oxy-eth-yl)amino]-benzoic acid monohydrate.

Authors:  Chunman Jia; Shangwen Chen; Wenbing Yuan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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