Literature DB >> 25550144

Phylogeny and biogeography of wild roses with specific attention to polyploids.

Marie Fougère-Danezan1, Simon Joly2, Anne Bruneau3, Xin-Fen Gao4, Li-Bing Zhang1.   

Abstract

BACKGROUND AND AIMS: The genus Rosa (150-200 species) is widely distributed throughout temperate and sub-tropical habitats from the northern hemisphere to tropical Asia, with only one tropical African species. In order to better understand the evolution of roses, this study examines infrageneric relationships with respect to conventional taxonomy, considers the extent of allopolyploidization and infers macroevolutionary processes that have led to the current distribution of the genus.
METHODS: Phylogenetic relationships among 101 species of the genus Rosa were reconstructed using sequences from the plastid psbA-trnH spacer, trnL intron, trnL-F spacer, trnS-G spacer and trnG intron, as well as from nuclear glyceraldehyde 3-phosphate dehydrogenase (GAPDH), which was used to identify putative allopolyploids and infer their possible origins. Chloroplast phylogeny was used to estimate divergence times and reconstruct ancestral areas. KEY
RESULTS: Most subgenera and sections defined by traditional taxonomy are not monophyletic. However, several clades are partly consistent with currently recognized sections. Allopolyploidy seems to have played an important role in stabilizing intersectional hybrids. Biogeographic analyses suggest that Asia played a central role as a genetic reservoir in the evolution of the genus Rosa.
CONCLUSIONS: The ancestral area reconstruction suggests that despite an early presence on the American continent, most extant American species are the results of a later re-colonization from Asia, probably through the Bering Land Bridge. The results suggest more recent exchanges between Asia and western North America than with eastern North America. The current distribution of roses from the Synstylae lineage in Europe is probably the result of a migration from Asia approx. 30 million years ago, after the closure of the Turgai strait. Directions for a new sectional classification of the genus Rosa are proposed, and the analyses provide an evolutionary framework for future studies on this notoriously difficult genus.
© The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Rosa; allopolyploidy; ancestral area reconstruction; biogeography; divergence time; hybridization; phylogeny; taxonomy

Mesh:

Substances:

Year:  2014        PMID: 25550144      PMCID: PMC4551085          DOI: 10.1093/aob/mcu245

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  38 in total

1.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

2.  Using RAPDs to study phylogenetic relationships in Rosa.

Authors:  T Millan; F Osuna; S Cobos; A M Torres; J I Cubero
Journal:  Theor Appl Genet       Date:  1996-02       Impact factor: 5.699

3.  Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae).

Authors:  T Sang; D Crawford; T Stuessy
Journal:  Am J Bot       Date:  1997-08       Impact factor: 3.844

4.  Hybridization between the escaped Rosa rugosa (Rosaceae) and native R. blanda in eastern North America.

Authors:  Marjorie Mercure; Anne Bruneau
Journal:  Am J Bot       Date:  2008-05       Impact factor: 3.844

5.  JML: testing hybridization from species trees.

Authors:  Simon Joly
Journal:  Mol Ecol Resour       Date:  2011-09-08       Impact factor: 7.090

6.  AFLP-based population structure analysis as a means to validate the complex taxonomy of dogroses (Rosa section Caninae).

Authors:  Jan De Riek; Katrien De Cock; Marinus J M Smulders; Hilde Nybom
Journal:  Mol Phylogenet Evol       Date:  2013-03-07       Impact factor: 4.286

7.  Evolutionary implications of permanent odd polyploidy in the stable sexual, pentaploid of Rosa canina L.

Authors:  K Y Lim; G Werlemark; R Matyasek; J B Bringloe; V Sieber; H El Mokadem; J Meynet; J Hemming; A R Leitch; A V Roberts
Journal:  Heredity (Edinb)       Date:  2005-05       Impact factor: 3.821

8.  Studies on chemical constituents and bioactivity of Rosa micrantha: an alternative antioxidants source for food, pharmaceutical, or cosmetic applications.

Authors:  Rafaela Guimarães; Lillian Barros; Ana Maria Carvalho; Isabel C F R Ferreira
Journal:  J Agric Food Chem       Date:  2010-05-26       Impact factor: 5.279

9.  Microsatellite analyses of artificial and spontaneous dogrose hybrids reveal the hybridogenic origin of Rosa micrantha by the contribution of unreduced gametes.

Authors:  Christiane M Ritz; Volker Wissemann
Journal:  J Hered       Date:  2011-01-10       Impact factor: 2.645

10.  Rate variation and estimation of divergence times using strict and relaxed clocks.

Authors:  Richard P Brown; Ziheng Yang
Journal:  BMC Evol Biol       Date:  2011-09-26       Impact factor: 3.260

View more
  25 in total

1.  Phytochemical characterization of Rosa multiflora Thunb. (Rosaceae) in Japan and South Korea, with a focus on the bioactive flavonol glycoside 'multiflorin A'.

Authors:  Yumi Kitahiro; Hiroshi Ikeda; Hyoung-Tak Im; Eiichi Kodaira; Makio Shibano
Journal:  J Nat Med       Date:  2019-04-04       Impact factor: 2.343

2.  Multiple and asymmetrical origin of polyploid dog rose hybrids (Rosa L. sect. Caninae (DC.) Ser.) involving unreduced gametes.

Authors:  V Herklotz; C M Ritz
Journal:  Ann Bot       Date:  2017-08-01       Impact factor: 4.357

3.  Complex and reticulate origin of edible roses (Rosa, Rosaceae) in China.

Authors:  Wei-Hua Cui; Xin-Yu Du; Mi-Cai Zhong; Wei Fang; Zhi-Quan Suo; Dan Wang; Xue Dong; Xiao-Dong Jiang; Jin-Yong Hu
Journal:  Hortic Res       Date:  2022-01-05       Impact factor: 6.793

4.  Genetic dissection of adventitious shoot regeneration in roses by employing genome-wide association studies.

Authors:  Thi Hong Nhung Nguyen; Dietmar Schulz; Traud Winkelmann; Thomas Debener
Journal:  Plant Cell Rep       Date:  2017-06-24       Impact factor: 4.570

5.  Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.).

Authors:  Carole F S Koning-Boucoiran; G Danny Esselink; Mirjana Vukosavljev; Wendy P C van 't Westende; Virginia W Gitonga; Frans A Krens; Roeland E Voorrips; W Eric van de Weg; Dietmar Schulz; Thomas Debener; Chris Maliepaard; Paul Arens; Marinus J M Smulders
Journal:  Front Plant Sci       Date:  2015-04-21       Impact factor: 5.753

6.  Pleistocene glaciations, demographic expansion and subsequent isolation promoted morphological heterogeneity: A phylogeographic study of the alpine Rosa sericea complex (Rosaceae).

Authors:  Yun-Dong Gao; Yu Zhang; Xin-Fen Gao; Zhang-Ming Zhu
Journal:  Sci Rep       Date:  2015-06-30       Impact factor: 4.379

7.  Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication.

Authors:  Yezi Xiang; Chien-Hsun Huang; Yi Hu; Jun Wen; Shisheng Li; Tingshuang Yi; Hongyi Chen; Jun Xiang; Hong Ma
Journal:  Mol Biol Evol       Date:  2017-02-01       Impact factor: 16.240

8.  The complete chloroplast genome sequences of the Rosa kokanica (Regel) Regel ex Juz. (Rosaceae).

Authors:  Tae-Young Choi; Aleksey Kim; Dong-Kap Kim; Su-Young Jung; Soo-Rang Lee
Journal:  Mitochondrial DNA B Resour       Date:  2021-06-28       Impact factor: 0.658

9.  Seasonal induction of alternative principal pathway for rose flower scent.

Authors:  Hiroshi Hirata; Toshiyuki Ohnishi; Kensuke Tomida; Haruka Ishida; Momoyo Kanda; Miwa Sakai; Jin Yoshimura; Hideyuki Suzuki; Takamasa Ishikawa; Hideo Dohra; Naoharu Watanabe
Journal:  Sci Rep       Date:  2016-02-01       Impact factor: 4.379

10.  The Rosa genome provides new insights into the domestication of modern roses.

Authors:  Olivier Raymond; Jérôme Gouzy; Jérémy Just; Hélène Badouin; Marion Verdenaud; Arnaud Lemainque; Philippe Vergne; Sandrine Moja; Nathalie Choisne; Caroline Pont; Sébastien Carrère; Jean-Claude Caissard; Arnaud Couloux; Ludovic Cottret; Jean-Marc Aury; Judit Szécsi; David Latrasse; Mohammed-Amin Madoui; Léa François; Xiaopeng Fu; Shu-Hua Yang; Annick Dubois; Florence Piola; Antoine Larrieu; Magali Perez; Karine Labadie; Lauriane Perrier; Benjamin Govetto; Yoan Labrousse; Priscilla Villand; Claudia Bardoux; Véronique Boltz; Céline Lopez-Roques; Pascal Heitzler; Teva Vernoux; Michiel Vandenbussche; Hadi Quesneville; Adnane Boualem; Abdelhafid Bendahmane; Chang Liu; Manuel Le Bris; Jérôme Salse; Sylvie Baudino; Moussa Benhamed; Patrick Wincker; Mohammed Bendahmane
Journal:  Nat Genet       Date:  2018-04-30       Impact factor: 38.330

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.