Literature DB >> 25541555

Generation of stable mutants and targeted gene deletion strains in Cryptococcus neoformans through electroporation.

Xiaorong Lin1, Nadia Chacko2, Linqi Wang2, Yashwant Pavuluri2.   

Abstract

Cryptococcus neoformans is the etiologic agent of cryptococcal meningitis that causes more than half a million deaths worldwide each year. This capsulated basidiomycetous yeast also serves as a model for micropathogenic studies. The ability to make stable mutants, either via ectopic integration or homologous recombination, has been accomplished using biolistic transformation. This technical advance has greatly facilitated the research on the basic biology and pathogenic mechanisms of this pathogen in the past two decades. However, biolistic transformation is costly, and its reproducibility varies widely. Here we found that stable ectopic integration or targeted gene deletion via homologous replacement could be accomplished through electroporative transformation. The stability of the transformants obtained through electroporation and the frequency of homologous replacement is highly dependent on the selective marker. A frequency of homologous recombination among the stable transformants obtained by electroporation is comparable to those obtained by biolistic transformation (∼10%) when dominant drug selection markers are used, which is much higher than what has been previously reported for electroporation when auxotrophic markers were used (0.001% to 0.1%). Furthermore, disruption of the KU80 gene or generation of gene deletion constructs using the split marker strategy, two approaches known to increase homologous replacement among transformants obtained through biolistic transformation, also increase the frequency of homologous replacement among transformants obtained through electroporation. Therefore, electroporation provides a low cost alternative for mutagenesis in Cryptococcus.
© The Author 2014. Published by Oxford University Press on behalf of The International Society for Human and Animal Mycology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Cryptococcus neoformans; dominant markers; ectopic integration; electroporation; gene disruption; transformation

Mesh:

Year:  2014        PMID: 25541555      PMCID: PMC4574871          DOI: 10.1093/mmy/myu083

Source DB:  PubMed          Journal:  Med Mycol        ISSN: 1369-3786            Impact factor:   4.076


  64 in total

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Journal:  Mol Cell Biol       Date:  1990-09       Impact factor: 4.272

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Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

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Journal:  Am J Pathol       Date:  1980-10       Impact factor: 4.307

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Authors:  T L Orr-Weaver; J W Szostak; R J Rothstein
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

10.  DNA-mediated transformation of the basidiomycete Coprinus cinereus.

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Journal:  EMBO J       Date:  1987-04       Impact factor: 11.598

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  21 in total

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Authors:  Yunfang Meng; Yumeng Fan; Wanqing Liao; Xiaorong Lin
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

2.  Multiple Applications of a Transient CRISPR-Cas9 Coupled with Electroporation (TRACE) System in the Cryptococcus neoformans Species Complex.

Authors:  Yumeng Fan; Xiaorong Lin
Journal:  Genetics       Date:  2018-02-14       Impact factor: 4.562

3.  A Family of Secretory Proteins Is Associated with Different Morphotypes in Cryptococcus neoformans.

Authors:  Rachana Gyawali; Srijana Upadhyay; Joshua Way; Xiaorong Lin
Journal:  Appl Environ Microbiol       Date:  2017-02-15       Impact factor: 4.792

4.  A joint PCR-based gene-targeting method using electroporation in the pathogenic fungus Trichosporon asahii.

Authors:  Yasuhiko Matsumoto; Tae Nagamachi; Asami Yoshikawa; Tsuyoshi Yamada; Takashi Sugita
Journal:  AMB Express       Date:  2022-07-14       Impact factor: 4.126

Review 5.  Gene transfer to plants by electroporation: methods and applications.

Authors:  Ibrahim Ilker Ozyigit
Journal:  Mol Biol Rep       Date:  2020-04-02       Impact factor: 2.316

6.  Secreted Acb1 Contributes to the Yeast-to-Hypha Transition in Cryptococcus neoformans.

Authors:  Xinping Xu; Youbao Zhao; Elyssa Kirkman; Xiaorong Lin
Journal:  Appl Environ Microbiol       Date:  2015-12-04       Impact factor: 4.792

7.  Transformation of Cryptococcus neoformans by electroporation using a transient CRISPR-Cas9 expression (TRACE) system.

Authors:  Jianfeng Lin; Yumeng Fan; Xiaorong Lin
Journal:  Fungal Genet Biol       Date:  2020-03-03       Impact factor: 3.495

8.  Targeted Genome Editing via CRISPR in the Pathogen Cryptococcus neoformans.

Authors:  Samantha D M Arras; Sheena M H Chua; Maha S I Wizrah; Joshua A Faint; Amy S Yap; James A Fraser
Journal:  PLoS One       Date:  2016-10-06       Impact factor: 3.240

9.  Chemical Inhibitors of Non-Homologous End Joining Increase Targeted Construct Integration in Cryptococcus neoformans.

Authors:  Samantha D M Arras; James A Fraser
Journal:  PLoS One       Date:  2016-09-19       Impact factor: 3.240

10.  Homology length dictates the requirement for Rad51 and Rad52 in gene targeting in the Basidiomycota yeast Naganishia liquefaciens.

Authors:  Maierdan Palihati; Hideo Tsubouchi; Bilge Argunhan; Rei Kajitani; Omirgul Bakenova; Yong-Woon Han; Yasuto Murayama; Takehiko Itoh; Hiroshi Iwasaki
Journal:  Curr Genet       Date:  2021-07-22       Impact factor: 3.886

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