| Literature DB >> 25539626 |
Markus G Seidel1, Tatjana Hirschmugl2, Laura Gamez-Diaz3, Wolfgang Schwinger4, Nina Serwas2, Andrea Deutschmann5, Gregor Gorkiewicz6, Werner Zenz5, Christian Windpassinger7, Bodo Grimbacher3, Christian Urban4, Kaan Boztug8.
Abstract
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Year: 2014 PMID: 25539626 PMCID: PMC4429722 DOI: 10.1016/j.jaci.2014.10.048
Source DB: PubMed Journal: J Allergy Clin Immunol ISSN: 0091-6749 Impact factor: 10.793
Fig E1Spectrum and timely appearance of clinical symptoms of 11 previously published patients with LRBA deficiency. The time point (patient age) of the first documentation and, if possible, the end of a certain clinical condition of 11 children and young adults with LRBA deficiency are grouped according to the organ manifestation in “hematology,” “infections,” “enteropathy,” and “other” (from bottom to top), according to recent publications by Lopez-Herrera et al, Alangari et al, and Burns et al. Only the primary immune and autoimmune diseases, but not secondary symptoms, such as finger clubbing, or cor pulmonale, are shown. AIHA, Autoimmune hemolytic anemia; AI-pancytopenia, autoimmune pancytopenia; CNS, central nervous system; ENT, ear, nose, and throat; infx, infections; ITP, immune thrombocytopenia; LIP, lymphocytic interstitial pneumonitis; LPD, lymphoproliferative disease.
Fig 1Clinical course of a familial autoimmunity syndrome caused by LRBA deficiency, immunohistochemical analysis of lymph node specimens (patient 1), and histologic assessment of gastrointestinal biopsy specimens (patient 2). A, Clinical course of a now 19-year-old girl, patient 1, including treatment and HSCT at the age of 10 years. B, Symptoms and treatment outline of patient 2. C,C.1, Triple immunohistochemical staining of T-cell markers showing increased double-negative T-cell numbers marked only with an antibody against CD3 (light blue/gray, dashed arrow), which is reminiscent of CD95 deficiency; CD4+ (brown, solid arrow) and CD8+ (purple, open arrow) T cells are also shown. C.2, Duodenal biopsy specimens showing focal villous flattening and intraepithelial lymphocytosis. C.3, Colon mucosa with moderate crypt distortion and sparse apoptotic bodies. C.4, Signs of vasculitis indicated by abundant neutrophilic granulocytes within and migrating through the lamina propria capillaries of the colon mucosa. Plasma cells were absent in all sections. AdV, Adenovirus; AIHA, autoimmune hemolytic anemia; ATG-F, anti-thymocyte globulin-Fresenius (Fresenius Medical Care, Vienna, Austria); AZT, azidothymidine; cITP, chronic immune thrombocytopenia; CsA, cyclosporin A; ENT, ear, nose, and throat; IVIG, intravenous immunoglobulin subsitution; LPD, lymphoproliferative disease; MFD-BMT, matched family donor bone marrow transplantation; MMF, mycophenolate mofetil; PEG tube, percutaneous enterogastral tube; TPN, total parenteral nutrition; SCIG, subcutaneous immunoglobulin subsitution; UTI, urinary tract infection.
Laboratory parameters of 2 patients with LRBA deficiency
| Patient 1 | Patient 2 | |||
|---|---|---|---|---|
| Before HSCT | After HSCT | Before rituximab | After rituximab | |
| Humoral immune system | 99.98% donor chimerism | (IVIG substituted) | ||
| IgG (g/L) | 11.3 (7-16) | NA | ||
| IgG1 (g/L) | 9.1 (3.5-9.1) | 7.85 (4.05-10.11) | NA | NA |
| IgG2 (g/L) | 3.06 (0.85-3.30) | 3.69 (1.69-7.86) | NA | NA |
| IgG3 (g/L) | NA | NA | ||
| IgG4 (g/L) | 0.01 (0.03-1.58) | 0.481 (0.03-2.01) | NA | NA |
| IgA (g/L) | 1.24 (0.83-2.17) | 2.61 (0.7-4.0) | 0.28 (0.21-2.92) | |
| IgM (g/L) | 1.43 (0.55-2.10) | 1.64 (0.4-2.3) | ||
| IgE (kU/L) | 24.7 | 44 (0-100) | <19 | <19 |
| Autoimmunity (selected autoantibodies) | ||||
| Coombs test, direct | Negative | Negative | ||
| Coombs test, indirect | Negative | Negative | ||
| Anti-platelet antibodies | Positive | Negative | ||
| ANA | Negative | Negative | Negative | Negative |
| dsDNA antibody | Negative | Negative | Negative | Negative |
| Cardiolipin IgG antibody (U/mL) | Negative | Negative | ||
| SMA (U/mL) | Negative | Negative | ||
| AMA | Negative | Negative | ||
| M2 antibody | Negative | Negative | Negative | |
| Cellular immune system | ||||
| CD3+ T cells/μL | 1,930 | 736 | 2,799 | 1325 |
| CD3+CD4+ cells/μL | 1,511 | 324 | 2,010 | 931 |
| CD3+CD8+ cells/μL | 296 | 367 | 601 | 325 |
| CD45RA+CD4+CD3+ cells (% of CD3+CD4+ cells) | 64 | 57 | 26 | |
| αβTCR+CD3+ cells/μL | ND | 638 | 2,578 | 1,097 |
| γδTCR+CD3+ cells/μL | ND | 10 | 137 | 39 |
| αβTCRCD3+CD4−CD8− (DNT cells [% of CD3+ cells]) | 0.95% to | 0.03% | 0.4% | |
| CD3−CD56+ NK cells/μL | 108 | 291 | 81 | |
| iNKT cells Va24Vb11 (% of CD3+ cells) | ND | 0.1% | ND | 0.02% |
| CD19+ B cells/μL | 335- | 213 | 413 | |
| CD19+IgD+CD27+ cells (% of CD19+ cells) | ND | ND | ||
| CD19+IgD−CD27+ cells (% of CD19+ cells) | ND | ND | ||
| Lymphocyte stimulation | Normal | ND | ND | Normal |
Footnotes indicate time point of analysis. Pathologic results are shown in boldface (normal ranges are shown in parentheses).
AMA, Anti-mitochondrial antibodies; ANA, antinuclear antibody; dsDNA, double-stranded DNA; iNKT, invariant natural killer T; NA, not applicable under IVIG substitution and not done before IVIG; ND, not done; NK, natural killer; PHA, phytohemagglutinine; PMA, phorbol 12-myristate 13-acetate; SCT, stem cell transplantation; SEB, staphylococcal enterotoxin B; SMA, smooth muscle autoantibodies; TCR, T-cell receptor.
At 6 years of age.
At 8 years.
At 10 years.
At 14 years (4 years after stem cell transplantation).
At 17 months.
At 2 years.
At 5.5 years before immunosuppression/rituximab.
At 7.5 years of age.
At 9 years of age.
At 10 years of age.
At 11 years of age.
At 19 years of age (9 years after HSCT).
Subfraction of antimitochondrial antibodies directed against the M2 fraction of liver cell mitochondrial antigens located on inner mitochondrial membranes (comprising proteins of the 2-oxo-acid dehydrogenase complex).
At 19.5 years of age (10 years after stem cell transplantation).
See the Methods section in this article's Online Repository.
On repeated occasions.
Additional laboratory parameters of 2 patients with LRBA deficiency
| Patient 1 | Patient 2 | |||
|---|---|---|---|---|
| Before HSCT | After HSCT | Before rituximab | After rituximab | |
| Humoral immune system | 99.98% donor chimerism | (IVIG substituted) | ||
| Anti–tetanus toxoid antibody | Good response | ND | NA | NA |
| Anti– | Good response | ND | NA | NA |
| IgG against EBV | NA | ND | Negative | NA |
| IgG against EBNA1 | NA | ND | NA | NA |
| IgG against CMV | Negative | ND | 208 U/mL | NA |
| IgG against hepatitis B | ND | NA | NA | |
| Polio IgG | Good response | ND | NA | NA |
| ANCA | Negative/unspecific | Negative/unspecific | Negative‡‡‡ | Negative‡‡‡ |
| TPO antibody | ND | Negative | Negative‡‡‡ | Negative‡‡‡ |
| TR antibody | ND | Negative | Negative‡‡‡ | Negative‡‡‡ |
| TG antibody | Negative | Negative‡‡‡ | Negative | |
| Islet cell antibody | Negative | Negative | ||
| Insulin antibody | ND | ND | Negative | Negative |
| Glutamate decarboxylase antibody | ND | Negative | ND | |
| Tyrosine phosphatase antibody | ND | ND | ND | Negative |
| 21-Hydroxylase antibody | ND | ND | ND | Normal |
| Gliadin IgA antibody | ND | ND | Negative | |
| Gliadin IgG antibody | ND | ND | Negative | |
| Transglutaminase antibody | ND | ND | ND | Negative |
| Endomysial IgG antibody | Negative | ND | ND. | Negative |
| Laboratory chemistry (selected parameters) | ||||
| TSH | Normal | Normal | Normal | |
| fT4 | Normal | Normal | Normal | 15.1 pmol/L |
| Elastase/stool (μg E1/g) | ND | ND | ||
| Calprotectin/stool (μg/g) | ND | ND | ||
| Vitamin B12 (pg/mL) | ND | ND | 179 | |
| Vitamin A | ND | ND | ND | |
| Vitamin D3 | ND | ND | ND | |
| Vitamin E | ND | ND | ND | |
| Prothrombin time | Normal | Normal | Normal | |
| Cellular immune system | ||||
| TREC copies/105 CD3+CD45+ cells | ND | ND | 2.13 | |
| Vβ spectratyping (diversity in CD4+ and CD8+ T cells) | ND | CD4+ normal; mildly reduced in CD8+ | ND | Normal in CD4+; mildly reduced in CD8+ |
| Phagocyte function (oxidative burst, phagocytosis; | Normal | ND | ND | ND |
| Apoptosis assay (PHA- or IL-2–activated T cells; annexin V staining) | Normal | ND | ND | Normal |
| ADA activity | Normal | ND | ND | ND |
| PNP activity | Normal | ND | ND | ND |
| Genetic analyses done before performance of whole-exome sequencing | ||||
| | Normal | Normal | ||
| | Normal | Normal | ||
| | Positive | Positive | ||
Footnotes indicate time point of analysis. Pathologic results are shown in boldface (normal ranges are in parentheses).
ADA, Adenosine desaminase; ANCA, anti-neutrophil cytoplasmic antibodies; CMV, cytomegalovirus; DHR, dihydrorhodamine; fT4, free thyroxine; NA, not applicable under IVIG substitution and not done before IVIG; ND, not done; PNP, purine nucleoside phosphorylase; SAP, signaling lymphocytic activation molecule (SLAM)-associated protein; SNP, single nucleotide polymorphism; TG, thyreoglobulin; TPO, thyroid peroxidase; TR, thyroid stimulating hormone receptor antibody; TSH, thyroid stimulating hormone; XIAP, X-linked inhibitor of apoptosis.
At 6 years of age.
At 8 years.
Low/negative after a break of repetitive IVIG therapy at 6 years; good response/high normal values after one booster vaccination at 6.5 years of age.
At 10 years.
At 14 years (4 years after stem cell transplantation).
At 17 months.
At 2 years.
At 5.5 years before immunosuppression/rituximab.
At 7.5 years of age.
At 9 years of age.
At 10 years of age.
At 11 years of age.
At 19 years of age (9 years after HSCT).
At 19.5 years of age (10 years after stem cell transplantation).
See the Methods section in this article's Online Repository.
At repeated occasions.
Fig E2Histologic assessment of lymph node and gastrointestinal biopsy specimens. A-C, Consecutive lymph node sections showing an increased CD4/CD8 T-cell ratio. D, Duodenal biopsy specimens showing focal villous flattening. E, EBV RNA–positive enterocyte nuclei in duodenal biopsy specimens. F, Moderate chronic gastritis with apoptotic cell debris underneath the surface epithelium in the gastric corpus. G, Focally enhanced chronic active gastritis in the gastric antrum. H, EBV RNA–positive antral epithelial cells. I, Apoptotic cell debris beneath the surface epithelium in the colonic mucosa. Plasma cells were absent in all sections.
Fig 2Representative depiction of single nucleotide polymorphism array–based homozygosity mapping and Sanger validation, pedigree of the core family, and LRBA protein detection by using fluorescence-activated cell sorting analysis. A, Chromosomal positions are plotted against the homozygosity score in a bar chart, with red bars indicating homozygous regions present in both affected siblings (top). The disease-causing mutation is localized in a homozygous interval (q22.2-q31.3) on the long arm of chromosome 4, as emphasized by the red box (bottom). B, Perfect segregation of the single base deletion (c.7162delA; p.T2388fs) is shown in the 2 patients, the nonaffected sibling, and the parents. Solid symbols indicate homozygous affected subjects, and half-filled symbols refer to the heterozygous carrier. Male and female subjects are distinguished by squares and circles, respectively. C, PBMCs were stimulated with PHA, as described in the Methods section in this article's Online Repository at www.jacionline.org. The increased LRBA protein expression after stimulation (black) compared with that in unstimulated cells (gray) is shown in the in-house control and in a travel control (1 and 2 asterisks, respectively; upper panel); is reduced in the LRBA-heterozygous mother, who was the stem cell donor, in patient 1 after HSCT; and is absent in patient 2 (lower panel). The plot is representative of 2 independent analyses.
List of candidate mutations identified in the index patient
| Function | Gene | Protein name | Exonic function | Amino acid change | dbSNP137 | |
|---|---|---|---|---|---|---|
| 1 | Exonic | LPS-responsive vesicle trafficking, beach and anchor containing | Frameshift deletion | NM_001199282:c.7162delA:p.T2388fs | ||
| 2 | Exonic | LPS-responsive vesicle trafficking, beach and anchor containing | Nonsynonymous SNV | NM_001199282:c.A2444G:p.N815S | rs140666848 | |
| 3 | Exonic | 3′-Phosphoadenosine 5′-phosphosulfate synthase 1 | Nonsynonymous SNV | NM_005443:c.C997T:p.R333C | rs35176475 | |
| 4 | Exonic | FAT atypical cadherin 4 | Nonsynonymous SNV | NM_024582:c.C6970T:p.R2324W | ||
| 5 | Exonic | FAT atypical cadherin 4 | Nonsynonymous SNV | NM_024582:c.G9577A:p.V3193I | rs143764643 | |
| 6 | Exonic | Mastermind-like 3 (Drosophila) | Nonframeshift deletion | NM_018717:c.2302_2304del:p.768_768del | rs5862430 | |
| 7 | Exonic | Solute carrier family 10, member 7 | Nonsynonymous SNV | NM_001029998:c.T806C:p.V269A | ||
| 8 | Exonic | WNK lysine deficient protein kinase 2 | Nonsynonymous SNV | NM_006648:c.A83T:p.E28V | ||
| 9 | Exonic | Chromosome 9 open reading frame 129 | Nonsynonymous SNV | NM_001098808:c.C359T:p.A120V | rs4744219 | |
| 10 | Exonic | Chromosome 9 open reading frame 129 | Nonsynonymous SNV | NM_001098808:c.G274A:p.G92S | rs3122944 | |
| 11 | Exonic | NUT family member 2F | Nonframeshift deletion | NM_017561:c.2071_2073del:p.691_691del | rs150455117 | |
| 12 | Exonic | NUT family member 2F | Nonsynonymous SNV | NM_017561:c.C410G:p.S137C | rs202099818 | |
| 13 | Exonic | Forkhead box E1 (thyroid transcription factor 2) | Nonframeshift deletion | NM_004473:c.511_516del:p.171_172del | ||
| 14 | Exonic | Collagen, type XV, alpha 1 | Nonsynonymous SNV | NM_001855:c.A3002G:p.K1001R | rs35544077 | |
| 15 | Splicing | ATP-binding cassette, sub-family A (ABC1), member 1 | NM_005502:exon41:c.5383-2->TTT | |||
| 16 | Splicing | Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | NM_153366:exon47:c.10505-2->T | |||
| 17 | Exonic | DnaJ (Hsp40) homolog, subfamily C, member 25 | Nonsynonymous SNV | NM_001015882:c.T486G:p.F162L | ||
| 18 | Splicing | Olfactomedin-like 2A | NM_182487:exon3:c.462+1G>T | |||
| 19 | Exonic | Rab9 effector protein with kelch motifs | Nonsynonymous SNV | NM_005833:c.C217T:p.H73Y | rs1128362 | |
| 20 | Exonic | Family with sequence similarity 73, member B | Nonsynonymous SNV | NM_032809:c.T299C:p.V100A | rs11544968 | |
| 21 | Exonic | Ubiquitin specific peptidase 20 | Nonframeshift deletion | NM_001008563:c.1072_1074del:p.358_358del | rs10602985 | |
| 22 | Exonic | Phosphatidic acid phosphatase type 2 domain containing 3 | Nonsynonymous SNV | NM_032728:c.G26A:p.R9H | rs148406586 | |
| 23 | Exonic | General transcription factor IIIC, polypeptide 4, 90kDa | Nonsynonymous SNV | NM_012204:c.G10A:p.A4T | rs143172300 | |
| 24 | Exonic | Golgin A6 family-like 10 | Nonsynonymous SNV | NM_001164465:c.G1025A:p.R342Q | rs201670904 | |
| 25 | Exonic | Golgin A6 family-like 10 | Nonsynonymous SNV | NM_001164465:c.G1007A:p.R336Q | rs200685620 | |
| 26 | Exonic | alkB, alkylation repair homolog 3 | Nonsynonymous SNV | NM_139178:c.C684G:p.D228E | rs1130290 | |
| 27 | Splicing | cAMP responsive element binding protein 3-like 1 | NM_052854:exon12:c.1524-1->G | rs79068197 | ||
| 28 | Exonic | Acid phosphatase 2, lysosomal | Nonsynonymous SNV | NM_001610:c.T1177C:p.F393L | rs145420520 | |
| 29 | Exonic | Alpha-kinase 3 | Nonsynonymous SNV | NM_020778:c.G4289A:p.R1430Q | rs150023454 | |
| 30 | Exonic | Aggrecan | Nonsynonymous SNV | NM_001135:c.G1274A:p.G425E |
SNV, Single nucleotide variant.