Literature DB >> 25537386

Prediction of molecular crystal structures by a crystallographic QM/MM model with full space-group symmetry.

Philipp Mörschel1, Martin U Schmidt1.   

Abstract

A crystallographic quantum-mechanical/molecular-mechanical model (c-QM/MM model) with full space-group symmetry has been developed for molecular crystals. The lattice energy was calculated by quantum-mechanical methods for short-range interactions and force-field methods for long-range interactions. The quantum-mechanical calculations covered the interactions within the molecule and the interactions of a reference molecule with each of the surrounding 12-15 molecules. The interactions with all other molecules were treated by force-field methods. In each optimization step the energies in the QM and MM shells were calculated separately as single-point energies; after adding both energy contributions, the crystal structure (including the lattice parameters) was optimized accordingly. The space-group symmetry was maintained throughout. Crystal structures with more than one molecule per asymmetric unit, e.g. structures with Z' = 2, hydrates and solvates, have been optimized as well. Test calculations with different quantum-mechanical methods on nine small organic molecules revealed that the density functional theory methods with dispersion correction using the B97-D functional with 6-31G* basis set in combination with the DREIDING force field reproduced the experimental crystal structures with good accuracy. Subsequently the c-QM/MM method was applied to nine compounds from the CCDC blind tests resulting in good energy rankings and excellent geometric accuracies.

Entities:  

Keywords:  blind test; crystal structure prediction; density functional theory; quantum mechanics/molecular mechanics

Year:  2015        PMID: 25537386     DOI: 10.1107/S2053273314018907

Source DB:  PubMed          Journal:  Acta Crystallogr A Found Adv        ISSN: 2053-2733            Impact factor:   2.290


  1 in total

1.  Structure determination of organic compounds by a fit to the pair distribution function from scratch without prior indexing.

Authors:  Carina Schlesinger; Stefan Habermehl; Dragica Prill
Journal:  J Appl Crystallogr       Date:  2021-05-09       Impact factor: 3.304

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.