Literature DB >> 25534258

Molecular phylogenetic studies based on rDNA ITS, cpDNA trnL intron sequence and cladode characteristics in nine Protasparagus taxa.

Partha Sarathi Saha1, Sudipta Ray, Mainak Sengupta, Sumita Jha.   

Abstract

The genus Asparagus comprises three subgenera of cladode bearing plants: Protasparagus, Asparagus, and Myrsiphyllum. The interspecific delimitation of the subgenus Protasparagus is ill-defined till date. In the present study, interspecific phylogenetic relationships among nine taxa of Protasparagus based on ribosomal DNA internal transcribed spacer region (ITS1-5.8S-ITS2) sequence and the chloroplast DNA trnL intron sequence conservation with their cladode morphology, anatomy, and stomatal characteristics have been analyzed for the first time. The monophyletic subgenus Protasparagus could be resolved into four strongly supported distinct subclades (I, II, III and IV) suggesting that the rDNA and cpDNA molecular phylogenies are explicitly congruent with the cladode characteristics of the subgenus Protasparagus. The present study also confirms the existing subgeneric classification of the genus Asparagus with the monophyletic origin of the dioecious subgenus Asparagus. The present work brings out phylogenetic and taxonomic relationships within the studied taxa of the subgenus Protasparagus therefore providing important background information for further studies on biogeography of a wide range of species.

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Year:  2014        PMID: 25534258     DOI: 10.1007/s00709-014-0746-5

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  8 in total

Review 1.  Ribosomal ITS sequences and plant phylogenetic inference.

Authors:  I Alvarez; J F Wendel
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

2.  Universal primers for amplification of three non-coding regions of chloroplast DNA.

Authors:  P Taberlet; L Gielly; G Pautou; J Bouvet
Journal:  Plant Mol Biol       Date:  1991-11       Impact factor: 4.076

3.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  Cladodes, leaf-like organs in Asparagus, show the significance of co-option of pre-existing genetic regulatory circuit for morphological diversity of plants.

Authors:  Hokuto Nakayama; Takahiro Yamaguchi; Hirokazu Tsukaya
Journal:  Plant Signal Behav       Date:  2012-07-27

6.  Molecular phylogeny of the genus Asparagus (Asparagaceae) explains interspecific crossability between the garden asparagus (A. officinalis) and other Asparagus species.

Authors:  Shosei Kubota; Itaru Konno; Akira Kanno
Journal:  Theor Appl Genet       Date:  2011-09-27       Impact factor: 5.699

7.  Acquisition and diversification of cladodes: leaf-like organs in the genus Asparagus.

Authors:  Hokuto Nakayama; Takahiro Yamaguchi; Hirokazu Tsukaya
Journal:  Plant Cell       Date:  2012-03-13       Impact factor: 11.277

8.  Evolutionary association of stomatal traits with leaf vein density in Paphiopedilum, Orchidaceae.

Authors:  Shi-Bao Zhang; Zhi-Jie Guan; Mei Sun; Juan-Juan Zhang; Kun-Fang Cao; Hong Hu
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

  8 in total
  3 in total

1.  A phylogenetic analysis of Momordica (Cucurbitaceae) in India based on karyo-morphology, nuclear DNA content and rDNA ITS1-5.8S-ITS2 sequences.

Authors:  Ipshita Ghosh; Partha Sarathi Saha; Biplab Kumar Bhowmick; Sumita Jha
Journal:  Protoplasma       Date:  2020-10-20       Impact factor: 3.356

2.  A molecular phylogeny of the genus Drimia (Asparagaceae: Scilloideae: Urgineeae) in India inferred from non-coding chloroplast and nuclear ribosomal DNA sequences.

Authors:  Partha S Saha; Sumita Jha
Journal:  Sci Rep       Date:  2019-05-17       Impact factor: 4.379

3.  Complete chloroplast genomes of Asparagus aethiopicus L., A. densiflorus (Kunth) Jessop 'Myers', and A. cochinchinensis (Lour.) Merr.: Comparative and phylogenetic analysis with congenerics.

Authors:  Kwan-Ho Wong; Bobby Lim-Ho Kong; Tin-Yan Siu; Hoi-Yan Wu; Grace Wing-Chiu But; Pang-Chui Shaw; David Tai-Wai Lau
Journal:  PLoS One       Date:  2022-04-25       Impact factor: 3.752

  3 in total

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