Literature DB >> 25526668

Draft genome sequence of an agar-degrading marine bacterium Flammeovirga pacifica WPAGA1.

Zhuhua Chan1, Runping Wang2, Shenglong Liu3, Chungui Zhao4, Suping Yang5, Runying Zeng3.   

Abstract

Flammeovirga pacifica WPAGA1(T), which was isolated from sediment of the west Pacific Ocean in 2009 has the ability to produce agar-oligosaccharides from Gracilaria lemaneiformis directly by enzyme-degradation. The draft genome sequence of this strain was sequenced and annotated. Its draft genome contained 6,507,364 bp with a G+C content of 33.8%. Genome sequence information provided a basis for analyzing the digestion of G. lemaneiformis.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Flammeovirga pacifica WPAGA1(T); Genome sequence; Gracilaria lemaneiformis; Oligosaccharides

Mesh:

Substances:

Year:  2014        PMID: 25526668     DOI: 10.1016/j.margen.2014.12.001

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  4 in total

1.  Novel Alginate Lyase (Aly5) from a Polysaccharide-Degrading Marine Bacterium, Flammeovirga sp. Strain MY04: Effects of Module Truncation on Biochemical Characteristics, Alginate Degradation Patterns, and Oligosaccharide-Yielding Properties.

Authors:  Wenjun Han; Jingyan Gu; Yuanyuan Cheng; Huihui Liu; Yuezhong Li; Fuchuan Li
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

2.  Seasonal Succession of Free-Living Bacterial Communities in Coastal Waters of the Western Antarctic Peninsula.

Authors:  Catherine M Luria; Linda A Amaral-Zettler; Hugh W Ducklow; Jeremy J Rich
Journal:  Front Microbiol       Date:  2016-11-03       Impact factor: 5.640

3.  Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92.

Authors:  Qi Dong; Lingwei Ruan; Hong Shi
Journal:  Stand Genomic Sci       Date:  2017-01-26

4.  A Novel Bifunctional Endolytic Alginate Lyase with Variable Alginate-Degrading Modes and Versatile Monosaccharide-Producing Properties.

Authors:  Chune Peng; Qingbin Wang; Danrong Lu; Wenjun Han; Fuchuan Li
Journal:  Front Microbiol       Date:  2018-02-08       Impact factor: 5.640

  4 in total

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