| Literature DB >> 25525593 |
Yubo Sun1, David R Mauerhan1, Nury M Steuerwald2, Jane Ingram1, Jeffrey S Kneisl1, Edward N Hanley1.
Abstract
Phosphocitrate (PC) inhibited calcium crystal-associated osteoarthritis (OA) in Hartley guinea pigs. However, the molecular mechanisms remain elusive. This study sought to determine PC targeted genes and the expression of select PC targeted genes in OA menisci to test hypothesis that PC exerts its disease modifying activity in part by reversing abnormal expressions of genes involved in OA. We found that PC downregulated the expression of numerous genes classified in immune response, inflammatory response, and angiogenesis, including chemokine (C-C motif) ligand 5, Fc fragment of IgG, low affinity IIIb receptor (FCGR3B), and leukocyte immunoglobulin-like receptor, subfamily B member 3 (LILRB3). In contrast, PC upregulated the expression of many genes classified in skeletal development, including collagen type II alpha1, fibroblast growth factor receptor 3 (FGFR3), and SRY- (sex determining region Y-) box 9 (SOX-9). Immunohistochemical examinations revealed higher levels of FCGR3B and LILRB3 and lower level of SOX-9 in OA menisci. These findings indicate that OA is a disease associated with immune system activation and decreased expression of SOX-9 gene in OA menisci. PC exerts its disease modifying activity on OA, at least in part, by targeting immune system activation and the production of extracellular matrix and selecting chondroprotective proteins.Entities:
Mesh:
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Year: 2014 PMID: 25525593 PMCID: PMC4265372 DOI: 10.1155/2014/210469
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Genes classified in the immune response.
| Biological process | Gene name | Gene ID | Differ expre* | Description |
|---|---|---|---|---|
| Immune response | ||||
| CCL20 | NM_004591 | −103.53 | Chemokine (C-C motif) ligand 20 | |
| CCL5 | NM_002985 | −3.54 | Chemokine (C-C motif) ligand 5 | |
| CCR5 | NM_000579 | −2.03 | Chemokine (C-C motif) receptor 5 | |
| CXCL3 | NM_002090 | −10.03 | Chemokine (C-X-C motif) ligand 3 | |
| CXCL5 | AK026546 | −4.49 | Chemokine (C-X-C motif) ligand 5 | |
| CXCL2 | M57731 | −2.94 | Chemokine (C-X-C motif) ligand 2 | |
| CXCL1 | NM_001511 | −3.01 | Chemokine (C-X-C motif) ligand 1 | |
| CXCL9 | NM_002416 | −2.65 | Chemokine (C-X-C motif) ligand 9 | |
| CXCL13 | NM_006419 | −2.62 | Chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) | |
| CXCR4 | AF348491 | −2.63 | Chemokine (C-X-C motif) receptor 4 | |
| IGKC | BC005332 | −37.44 | Netrin 2-like (chicken) | |
| IL6 | NM_000600 | −32.07 | Interleukin 6 (interferon, beta 2) | |
| IL8 | NM_000584 | −8.17 | Interleukin 8 | |
| IL23A | M15564 | −7.89 | Enhancer of polycomb homolog 1 (Drosophila) | |
| IL24 | NM_006850 | −3.73 | Interleukin 24 | |
| IL15 | NM_000585 | −3.70 | Interleukin 15 | |
| IL7R | BE217880 | −3.31 | Interleukin 7 receptor | |
| IL1B | NM_000576 | −2.28 | Interleukin 1, beta | |
| IL1RN | BE563442 | −2.80 | Interleukin 1 receptor antagonist | |
| MS4A2 | NM_000139 | −28.91 | Membrane-spanning 4-domains, subfamily A, member 2 | |
| FCGR3B | NM_000570 | −22.56 | Fc fragment of IgG, low affinity IIIb, receptor (CD16b) | |
| FCGR2B | U90940 | −7.13 | Fc fragment of IgG, low affinity IIc, receptor for (CD32) | |
| FCGR1B | L03419 | −3.30 | Fc fragment of IgG, high affinity Ib, receptor (CD64) | |
| FCER1A | BC005912 | −5.19 | Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide | |
| HLA-C | AW575927 | −22.41 | Major histocompatibility complex, class I, C | |
| HLA-F | BE138825 | −2.22 | Major histocompatibility complex, class I, F | |
| AQP9 | NM_020980 | −17.49 | Aquaporin 9 | |
| GZMA | NM_006144 | −14.63 | Granzyme A | |
| IGHG1 | M87789 | −14.43 | Immunoglobulin heavy constant gamma 1 | |
| LBP | M35533 | −11.36 | Lipopolysaccharide binding protein | |
| EREG | NM_001432 | −8.60 | Epiregulin | |
| CD86 | NM_006889 | −7.11 | CD86 molecule | |
| CD74 | M28590 | −2.76 | CD74 molecule | |
| CD40 | NM_001250 | −3.68 | CD40 molecule, TNF receptor superfamily member 5 | |
| CD1D | NM_001766 | −5.17 | CD1d molecule | |
| CD8A | AW006735 | −4.99 | CD8a molecule | |
| CD14 | NM_000591 | −3.25 | CD14 molecule | |
| CD209 | AF290886 | −2.50 | CD209 molecule | |
| KYNU | BC000879 | −6.69 | Kynureninase (L-kynurenine hydrolase) | |
| PTPRC | NM_002838 | −5.88 | Protein tyrosine phosphatase, receptor type, C | |
| TLR8 | AW872374 | −5.55 | Toll-like receptor 8 | |
| TLR7 | NM_016562 | −3.34 | Toll-like receptor 7 | |
| TLR5 | AF051151 | −3.00 | Toll-like receptor 5 | |
| TLR4 | NM_003266 | −2.40 | Toll-like receptor 4 | |
| TLR2 | NM_003264 | −2.20 | Toll-like receptor 2 | |
| TLR1 | AL050262 | −2.66 | Toll-like receptor 1 | |
| SLC11A1 | L32185 | −5.41 | Solute carrier family 11, member 1 | |
| CFD | NM_001928 | −4.99 | Complement factor D (adipsin) | |
| CFI | BC020718 | −3.37 | Complement factor I | |
| CFB | NM_001710 | −2.39 | Complement factor B | |
| C3 | NM_000064 | −2.32 | Complement component 3 | |
| CR1 | AI052659 | −2.24 | Complement component (3b/4b) receptor 1 (Knops blood group) | |
| C1QA | NM_015991 | −2.20 | Complement component 1, q subcomponent, A chain | |
| C1QB | NM_000491 | −2.10 | Complement component 1, q subcomponent, B chain | |
| C1RL | NM_016546 | 2.01 | Complement component 1, r subcomponent-like | |
| FYB | BF679849 | −4.64 | FYN binding protein (FYB-120/130) | |
| TREM1 | NM_018643 | −4.52 | Triggering receptor expressed on myeloid cells 1 | |
| BMP6 | NM_001718 | −4.48 | Bone morphogenetic protein 6 | |
| INPP5D | U53470 | −4.47 | Inositol polyphosphate-5-phosphatase, 145 kDa | |
| LILRB1 | NM_006669 | −4.33 | Leukocyte immunoglobulin-like receptor, subfamily B, member 1 | |
| LILRB2 | AF004231 | −4.32 | Leukocyte immunoglobulin-like receptor, subfamily B, member 2 | |
| LILRB3 | AF009634 | −4.23 | leukocyte immunoglobulin-like receptor, subfamily B, member 3 | |
| LILRB4 | U82979 | −2.06 | Leukocyte immunoglobulin-like receptor, subfamily B, member 4 | |
| LILRB5 | NM_006840 | −2.31 | Leukocyte immunoglobulin-like receptor, subfamily B, member 5 | |
| LILRA2 | NM_006866 | −2.15 | Leukocyte immunoglobulin-like receptor, subfamily A, member 2 | |
| ZEB1 | NM_030751 | −4.12 | Zinc finger E-box binding homeobox 1 | |
| PLA2G7 | M80436 | −3.95 | Platelet-activating factor receptor | |
| MASP1 | AI274095 | −3.67 | Mannan-binding lectin serine peptidase 1 | |
| EBI2 | NM_004951 | −3.59 | Epstein-Barr virus induced gene 2 | |
| NOD2 | NM_022162 | −3.57 | Nucleotide-binding oligomerization domain containing 2 | |
| LAIR1 | NM_021708 | −3.54 | Leukocyte-associated immunoglobulin-like receptor 1 | |
| HLA-DQA1 | BG397856 | −3.38 | Major histocompatibility complex, class II, DQ alpha 1 | |
| HLA-DQB1 | M17955 | −2.99 | Major histocompatibility complex, class II, DQ beta 1 | |
| HLA-DRA | M60333 | −3.22 | Major histocompatibility complex, class II, DR alpha | |
| HLA-DPA1 | M27487 | −2.83 | Major histocompatibility complex, class II, DP alpha 1 | |
| HLA-DPB1 | NM_002121 | −2.15 | Major histocompatibility complex, class II, DP beta 1 | |
| HLA-DRB4 | BC005312 | −2.81 | Major histocompatibility complex, class II, DR beta 4 | |
| HLA-DRB1 | AJ297586 | −2.72 | Major histocompatibility complex, class II, DR beta 3 | |
| HLA-DMB | NM_002118 | −2.68 | Major histocompatibility complex, class II, DM beta | |
| HLA-DMA | X76775 | −2.19 | major histocompatibility complex, class II, DM alpha | |
| LIF | NM_002309 | −3.16 | Leukemia inhibitory factor (cholinergic differentiation factor) | |
| NCF4 | NM_000631 | −2.88 | Neutrophil cytosolic factor 4, 40 kDa | |
| PAG1 | BF589359 | −2.86 | Phosphoprotein associated with glycosphingolipid microdomains 1 | |
| FYN | AK090692 | −2.85 | FYN oncogene related to SRC, FGR, YES | |
| TREM2 | NM_018965 | −2.84 | Triggering receptor expressed on myeloid cells 2 | |
| BST2 | NM_004335 | −2.84 | Bone marrow stromal cell antigen 2 | |
| CTSG | NM_001911 | −2.78 | Cathepsin G | |
| CTSS | AK024855 | −2.60 | Cathepsin S | |
| MS4A1 | AW474852 | −2.74 | Membrane-spanning 4-domains, subfamily A, member 1 | |
| NCF2 | BC001606 | −2.70 | Neutrophil cytosolic factor 2 | |
| GPR65 | NM_003608 | −2.68 | G protein-coupled receptor 65 | |
| GBP4 | BG260886 | −2.59 | Guanylate binding protein 4 | |
| VAV1 | NM_005428 | −2.53 | Vav 1 guanine nucleotide exchange factor | |
| LCK | NM_005356 | −2.49 | Lymphocyte-specific protein tyrosine kinase | |
| SYK | NM_003177 | −2.42 | Spleen tyrosine kinase | |
| LY86 | NM_004271 | −2.36 | Lymphocyte antigen 86 | |
| TNFSF10 | U57059 | −2.36 | Tumor necrosis factor (ligand) superfamily, member 10 | |
| TNFSF13B | AF134715 | −2.29 | Tumor necrosis factor (ligand) superfamily, member 13b | |
| IRF8 | AI073984 | −2.36 | Interferon regulatory factor 8 | |
| RELB | NM_006509 | −2.33 | V-rel reticuloendotheliosis viral oncogene homolog B | |
| SMAD6 | AI628464 | −2.25 | SMAD family member 6 | |
| MBP | N37023 | −2.24 | Myelin basic protein | |
| BCL6 | S67779 | −2.17 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | |
| IGKC | BG485135 | −2.12 | Netrin 2-like (chicken) | |
| CLEC7A | AF313468 | −2.12 | C-type lectin domain family 7, member A | |
| LCP2 | AI123251 | −2.05 | Lymphocyte cytosolic protein 2 | |
| IL31RA | AI123586 | 6.61 | Interleukin 31 receptor A | |
| C4BPA | NM_000715 | 3.34 | Complement component 4 binding protein, alpha | |
| ULBP2 | AA831769 | 3.07 | UL16 binding protein 2 | |
| CLEC4E | NM_014358 | 2.61 | C-type lectin domain family 4, member E | |
| TNFSF9 | NM_003811 | 2.43 | Tumor necrosis factor (ligand) superfamily, member 9 | |
| C7 | NM_000587 | 2.36 | Complement component 7 | |
| TGFB2 | NM_003238 | 2.36 | Transforming growth factor, beta 2 | |
| FAS | X83493 | 2.36 | Fas (TNF receptor superfamily, member 6) | |
| LAG3 | NM_002286 | 2.26 | Lymphocyte-activation gene 3 | |
| IL27RA | NM_004843 | 2.20 | Interleukin 27 receptor, alpha | |
| CD276 | NM_025240 | 2.19 | CD276 molecule | |
| IL26 | NM_018402 | 2.03 | Interleukin 26 | |
| OAS1 | NM_016816 | 2.02 | 2,5-oligoadenylate synthetase 1, 40/46 kDa |
*Negative number indicates decreased expression and positive number indicates increased expression (fold change) in PC-treated OA meniscal explants compared with untreated OA meniscal explants.
Genes classified in inflammatory response and angiogenesis.
| Biological process | Gene name | Gene ID | Differ expre (fold)* | Description |
|---|---|---|---|---|
| Inflammatory response | ||||
| CCL20 | NM_004591 | −103.53 | Chemokine (C-C motif) ligand 20 | |
| CCL5 | NM_002985 | −3.54 | Chemokine (C-C motif) ligand 5 | |
| CCR5 | NM_000579 | −2.03 | Chemokine (C-C motif) receptor 5 | |
| CXCL3 | NM_002090 | −10.03 | Chemokine (C-X-C motif) ligand 3 | |
| CXCL2 | M57731 | −2.94 | Chemokine (C-X-C motif) ligand 2 | |
| CXCL1 | NM_001511 | −3.01 | Chemokine (C-X-C motif) ligand 1 | |
| CXCL9 | NM_002416 | −2.65 | Chemokine (C-X-C motif) ligand 9 | |
| CXCL13 | NM_006419 | −2.62 | Chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) | |
| CXCR4 | AF348491 | −2.63 | Chemokine (C-X-C motif) receptor 4 | |
| PTGS2 | AY151286 | −34.01 | Prostaglandin-endoperoxide synthase 2 | |
| IL6 | NM_000600 | −32.07 | Interleukin 6 (interferon, beta 2) | |
| IL23A | AF043179 | −16.44 | Enhancer of polycomb homolog 1 (Drosophila) | |
| IL8 | NM_000584 | −8.17 | Interleukin 8 | |
| IL1B | NM_000576 | −2.28 | Interleukin 1, beta | |
| IL1RN | BE563442 | −2.80 | Interleukin 1 receptor antagonist | |
| S100A8 | NM_002964 | −16.53 | S100 calcium binding protein A8 | |
| S100A9 | NM_002965 | −2.79 | S100 calcium binding protein A9 | |
| LBP | M35533 | −11.36 | Lipopolysaccharide binding protein | |
| APOE | NM_000041 | −9.23 | Apolipoprotein E | |
| FABP4 | AI766029 | −6.98 | Fatty acid binding protein 4, adipocyte | |
| LYZ | U25677 | −6.37 | Lysozyme (renal amyloidosis) | |
| ITIH4 | AI004137 | −6.33 | Inter-alpha (globulin) inhibitor H4 | |
| BDKRB2 | NM_000623 | −6.01 | Bradykinin receptor B2 | |
| TLR8 | AW872374 | −5.55 | Toll-like receptor 8 | |
| TLR7 | NM_016562 | −3.34 | Toll-like receptor 7 | |
| TLR5 | AF051151 | −3.00 | Toll-like receptor 5 | |
| TLR4 | NM_003266 | −2.40 | Toll-like receptor 4 | |
| TLR2 | NM_003264 | −2.20 | Toll-like receptor 2 | |
| TLR1 | AL050262 | −2.66 | Toll-like receptor 1 | |
| AOX1 | AB046692 | −5.34 | Aldehyde oxidase 1 | |
| FCER1A | BC005912 | −5.19 | Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide | |
| CFD | NM_001928 | −4.99 | Complement factor D (adipsin) | |
| CFI | BC020718 | −3.37 | Complement factor I | |
| CFB | NM_001710 | −2.39 | Complement factor B | |
| C3 | NM_000064 | −2.32 | Complement component 3 | |
| CR1 | AI052659 | −2.24 | Complement component (3b/4b) receptor 1 (Knops blood group) | |
| C1RL | NM_016546 | −2.01 | Complement component 1, r subcomponent-like | |
| C1QA | NM_015991 | −2.20 | Complement component 1, q subcomponent, A chain | |
| C1QB | NM_000491 | −2.10 | Complement component 1, q subcomponent, B chain | |
| AOAH | NM_001637 | −4.89 | Acyloxyacyl hydrolase (neutrophil) | |
| AGT | NM_000029 | −4.66 | Angiotensinogen (serpin peptidase inhibitor, clade A, member 8) | |
| BMP6 | NM_001718 | −4.48 | Bone morphogenetic protein 6 | |
| PLA2G7 | M80436 | −3.95 | Platelet-activating factor receptor | |
| FOS | BC004490 | −3.95 | V-fos FBJ murine osteosarcoma viral oncogene homolog | |
| CD40 | NM_001250 | −3.68 | CD40 molecule, TNF receptor superfamily member 5 | |
| CD163 | NM_004244 | −3.68 | CD163 molecule | |
| CD14 | NM_000591 | −3.25 | CD14 molecule | |
| MASP1 | AI274095 | −3.67 | Mannan-binding lectin serine peptidase 1 | |
| F11R | AF191495 | −3.16 | F11 receptor | |
| ITGB2 | L78790 | −2.98 | Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) | |
| NLRC4 | NM_021209 | −2.92 | NLR family, CARD domain containing 4 | |
| AIF1 | U19713 | −2.76 | Allograft inflammatory factor 1 | |
| ALOX5 | NM_000698 | −2.71 | Arachidonate 5-lipoxygenase | |
| NOD1 | AF126484 | −2.66 | Nucleotide-binding oligomerization domain containing 1 | |
| JMJD3 | AI830331 | −2.46 | Jumonji domain containing 3, histone lysine demethylase | |
| SIGLEC1 | NM_023068 | −2.46 | Sialic acid binding Ig-like lectin 1, sialoadhesin | |
| TNFAIP6 | AW188198 | −2.37 | Tumor necrosis factor, alpha-induced protein 6 | |
| LY86 | NM_004271 | −2.36 | Lymphocyte antigen 86 | |
| AOC3 | NM_003734 | −2.31 | Amine oxidase, copper containing 3 (vascular adhesion protein 1) | |
| TNFRSF1B | NM_001066 | −2.21 | Tumor necrosis factor receptor superfamily, member 1B | |
| BCL6 | S67779 | −2.17 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | |
| CLEC7A | AF313468 | −2.12 | C-type lectin domain family 7, member A | |
| CDO1 | NM_001801 | −2.11 | Cysteine dioxygenase, type I | |
| NFATC4 | AI806528 | −2.04 | NF of activated T-cells, cytoplasmic, calcineurin-dependent 4 | |
| SERPINA3 | NM_001085 | 5.20 | Serpin peptidase inhibitor, clade A, member 3 | |
| SERPINA1 | AF119873 | 3.58 | Serpin peptidase inhibitor, clade A, member 1 | |
| C4BPA | NM_000715 | 3.34 | Complement component 4 binding protein, alpha | |
| FN1 | AJ276395 | 3.03 | Fibronectin 1 | |
| B4GALT1 | D29805 | 2.99 | UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1 | |
| GPR68 | AI805006 | 2.40 | G protein-coupled receptor 68 | |
| C7 | NM_000587 | 2.36 | Complement component 7 | |
| ANXA1 | AU155094 | 2.23 | Annexin A1 | |
| KLKB1 | NM_000892 | 2.21 | Cytochrome P450, family 4, subfamily V, polypeptide 2 | |
| Angiogenesis | ||||
| PTGS2 | AY151286 | −34.00 | Prostaglandin-endoperoxide synthase 2 | |
| BAI3 | NM_001704 | −33.48 | Brain-specific angiogenesis inhibitor 3 | |
| IL6 | NM_000600 | −32.08 | Interleukin 6 (interferon, beta 2) | |
| IL8 | NM_000584 | −8.18 | Interleukin 8 | |
| IL1B | NM_000576 | −2.28 | Interleukin 1, beta | |
| SFRP1 | AF017987 | −17.55 | Secreted frizzled-related protein 1 | |
| ANGPTL4 | AF169312 | −11.43 | Angiopoietin-like 4 | |
| ANGPT2 | BE501356 | −2.56 | Angiopoietin 2 | |
| EREG | NM_001432 | −8.60 | Epiregulin | |
| VEGFA | M27281 | −7.91 | Vascular endothelial growth factor A | |
| VASH1 | AU152507 | −4.24 | Vasohibin 1 | |
| FLT1 | U01134 | −3.62 | Fms-related tyrosine kinase 1 | |
| PTPRB | AL080103 | −3.48 | Protein tyrosine phosphatase, receptor type, B | |
| FGF10 | NM_004465 | −3.34 | Fibroblast growth factor 10 | |
| LIF | NM_002309 | −3.16 | Leukemia inhibitory factor (cholinergic differentiation factor) | |
| BTG1 | BC009050 | −3.11 | B-cell translocation gene 1, anti-proliferative | |
| DLL4 | AB036931 | −2.85 | Delta-like 4 (Drosophila) | |
| SOX17 | NM_022454 | −2.45 | SRY (sex determining region Y)-box 17 | |
| EPAS1 | NM_001430 | −2.43 | Endothelial PAS domain protein 1 | |
| CTNNB1 | AB062292 | −2.35 | Catenin (cadherin-associated protein), beta 1, 88 kDa | |
| TGFBR2 | NM_003242 | −2.35 | Transforming growth factor, beta receptor II (70/80 kDa) | |
| TYMP | NM_001953 | −2.34 | Thymidine phosphorylase | |
| C3 | NM_000064 | −2.32 | Complement component 3 | |
| NRP1 | AF280547 | −2.19 | Neuropilin 1 | |
| NOTCH4 | AI743713 | −2.17 | Notch homolog 4 (Drosophila) | |
| TSPAN12 | AI056699 | −2.16 | Tetraspanin 12 | |
| ADAM8 | NM_001109 | −2.15 | ADAM metallopeptidase domain 8 | |
| RHOB | AI263909 | −2.12 | Ras homolog gene family, member B | |
| HHEX | NM_001529 | −2.12 | Hematopoietically expressed homeobox | |
| THBS1 | BF055462 | −2.05 | Thrombospondin 1 | |
| KDR | NM_002253 | −2.03 | Kinase insert domain receptor (a type III receptor tyrosine kinase) | |
| GREM1 | NM_013372 | 15.86 | Gremlin 1, cysteine knot superfamily, homolog ( | |
| FGFR2 | AB030078 | 4.49 | Fibroblast growth factor receptor 2 | |
| FGF1 | X59065 | 2.39 | fibroblast growth factor 1 (acidic) | |
| FGF18 | AI798863 | 2.33 | Fibroblast growth factor 18 | |
| COL8A2 | AI806793 | 4.46 | Collagen, type VIII, alpha 2 | |
| COL8A1 | BE877796 | 3.30 | Collagen, type VIII, alpha 1 | |
| ARHGAP22 | NM_021226 | 4.45 | Rho GTPase activating protein 22 | |
| TNFRSF12A | NM_016639 | 3.23 | Tumor necrosis factor receptor superfamily, member 12A | |
| CSPG4 | BE857703 | 3.14 | Chondroitin sulfate proteoglycan 4 | |
| WNT5B | NM_030775 | 3.10 | Wingless-type MMTV integration site family, member 5B | |
| FN1 | AJ276395 | 3.03 | Fibronectin 1 | |
| SFRP2 | AF311912 | 3.00 | Secreted frizzled-related protein 2 | |
| B4GALT1 | D29805 | 2.99 | UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1 | |
| ANGPT1 | NM_001146 | 2.62 | Angiopoietin 1 | |
| MFGE8 | BC003610 | 2.39 | Milk fat globule-EGF factor 8 protein | |
| TGFB2 | NM_003238 | 2.36 | Transforming growth factor, beta 2 | |
| CYR61 | NM_001554 | 2.30 | Cysteine-rich, angiogenic inducer, 61 | |
| MEOX2 | NM_005924 | 2.15 | Mesenchyme homeobox 2 | |
| PLXDC1 | NM_020405 | 2.09 | Plexin domain containing 1 | |
| TBXA2R | NM_001060 | 2.09 | Thromboxane A2 receptor |
*Negative number indicates decreased expression and positive number indicates increased expression (fold change).
Genes classified in skeletal development, steroid biosynthetic process, and DNA repair.
| Biological process | Gene name | Gene ID | Differ expre (fold)* | Description |
|---|---|---|---|---|
| Skeletal development | ||||
| COL2A1 | X06268 | 21.29 | Collagen, type II, alpha 1 | |
| COL11A1 | J04177 | 9.86 | Collagen, type XI, alpha 1 | |
| COL1A1 | AI743621 | 2.59 | Collagen, type I, alpha 1 | |
| ACAN | NM_001135 | 9.17 | Aggrecan | |
| POSTN | AW137148 | 5.57 | Periostin, osteoblast specific factor | |
| PAX1 | AA725078 | 4.73 | Paired box 1 | |
| FRZB | U91903 | 3.22 | Frizzled-related protein | |
| MMP9 | NM_004994 | 2.58 | Matrix metallopeptidase 9 | |
| GLI2 | NM_030379 | 2.54 | GLI-Kruppel family member GLI2 | |
| FGFR3 | NM_000142 | 2.40 | Fibroblast growth factor receptor 3 | |
| FGF18 | AI798863 | 2.33 | Fibroblast growth factor 18 | |
| TGFB2 | NM_003238 | 2.36 | Transforming growth factor, beta 2 | |
| TRPS1 | AK000948 | 2.32 | Trichorhinophalangeal syndrome I | |
| RUNX2 | AW469546 | 2.24 | Runt-related transcription factor 2 | |
| PRELP | U41344 | 2.15 | Proline/arginine-rich end leucine-rich repeat protein | |
| PAPSS2 | AW299958 | 2.03 | 3-phosphoadenosine 5-phosphosulfate synthase 2 | |
| SOX9 | NM_000346 | 2.00 | SRY (sex determining region Y)-box 9 | |
| MEPE | NM_020203 | −13.5 | Matrix, extracellular phosphoglycoprotein with ASARM motif | |
| PTHLH | BC005961 | −6.79 | Parathyroid hormone-like hormone | |
| CHRDL2 | AF332891 | −6.20 | Chordin-like 2 | |
| COL10A | X98568 | −5.40 | collagen, type X, alpha 1 (Schmid metaphyseal chondrodysplasia) | |
| BMP6 | NM_001718 | −4.48 | Bone morphogenetic protein 6 | |
| GDF10 | NM_004962 | −2.99 | Growth differentiation factor 10 | |
| BMP8B | AA610122 | −2.70 | Bone morphogenetic protein 8b | |
| TGFBR2 | NM_003242 | −2.35 | Transforming growth factor, beta receptor II (70/80 kDa) | |
| IGFBP4 | NM_001552 | −2.30 | Insulin-like growth factor binding protein 4 | |
| Steroid biosynthetic process | ||||
| SQLE | AA639705 | 3.81 | Squalene epoxidase | |
| SRD5A1 | NM_001047 | 3.75 | Steroid-5-alpha-reductase, alpha polypeptide 1 | |
| FDXR | NM_004110 | 3.26 | Ferredoxin reductase | |
| HMGCS1 | NM_002130 | 3.12 | 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) | |
| HMGCR | AL518627 | 2.15 | 3-hydroxy-3-methylglutaryl-Coenzyme A reductase | |
| LSS | D63807 | 3.04 | Lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) | |
| DHCR24 | NM_014762 | 2.66 | 24-dehydrocholesterol reductase | |
| DHCR7 | NM_001360 | 2.57 | 7-dehydrocholesterol reductase | |
| OPRS1 | NM_005866 | 2.62 | Opioid receptor, sigma 1 | |
| CYB5R2 | NM_016229 | 2.37 | Cytochrome b5 reductase 2 | |
| SC5D | D85181 | 2.06 | Sterol-C5-desaturase | |
| BMP6 | NM_001718 | −4.48 | Bone morphogenetic protein 6 | |
| CYP39A1 | NM_016593 | −2.21 | Cytochrome P450, family 39, subfamily A, polypeptide 1 | |
| HSD3B7 | BC004929 | −2.10 | 3 beta-hydroxysteroid dehydrogenase type 7 | |
| ADM | NM_001124 | −2.06 | Adrenomedullin | |
| ABCG1 | NM_004915 | −2.04 | ATP-binding cassette, sub-family G (WHITE), member 1 | |
| DNA repair | ||||
| TOP2A | AU159942 | 3.75 | Topoisomerase (DNA) II alpha 170 kDa | |
| RAD52B | AF125949 | 2.83 | RAD52 homolog ( | |
| RAD54B | NM_012415 | 2.05 | RAD54 homolog B ( | |
| TYMS | NM_001071 | 2.40 | Thymidylate synthetase | |
| RFC5 | BG260658 | 2.39 | Replication factor C (activator 1) 5, 36.5 kDa | |
| SOD2 | AL050388 | −9.58 | Superoxide dismutase 2, mitochondrial | |
| REV3L | NM_002912 | −3.08 | REV3-like, catalytic subunit of DNA polymerase zeta (yeast) |
*Negative number indicates decreased expression and positive number indicates increased expression (fold change).
Differential expression of selected genes.
| Gene name | Gene ID | Differential expression* microarray | Differential expression** microarray | Differential expression*** real-time RT-PCR |
|---|---|---|---|---|
| CCL5 | NM_002985 | −3.54 | −6.28 | −3.69 |
| CCR5 | NM_000579 | −2.03 | −2.95 | |
| FCGR3B | NM_000570 | −6.49 | −2.09 | |
| FCGR2B | M31933 | −3.45 | −3.72 | |
| IL6 | NM_000600 | −32.07 | −1.85 | |
| IL7R | BE217880 | −3.31 | −11.0 | −2.85 |
| IL8 | NM_000584 | −8.17 | −2.25 | |
| IL23A | M15564 | −7.89 | −8.98 | |
| LILRB1 | NM_006669 | −4.33 | −3.06 | |
| LILRB3 | AF009634 | −4.23 | −3.38 | |
| TLR8 | AW872374 | −5.55 | −3.55 | |
| TLR7 | NM_016562 | −3.34 | −2.54 | |
| HLA-DRB1 | AJ297586 | −2.72 | −3.41 | −1.97 |
| S100A8 | NM_002964 | −16.53 | −9.95 | |
| S100A9 | NM_002965 | −2.79 | −4.70 | |
| PTPRC | NM_002838 | −5.88 | −2.85 | |
| SYK | NM_003177 | −2.42 | −2.99 | |
| BMP6 | NM_001718 | −4.48 | −3.00 | |
| CPA3 | NM_001870 | −15.23 | −9.37 | |
| CPM | BE878495 | −3.17 | −2.74 | |
| ADAMTS5 | BI254089 | −2.84 | −1.98 | −2.65 |
| ADAM28 | NM_021778 | −14.27 | −3.59 | |
| MMP10 | NM_002425 | −2.41 | −1.56 | |
| MMP1 | NM_002421 | −2.15 | −1.83 | −2.01 |
| FGFR3 | NM_000142 | 2.40 | 1.52 | |
| SOX-9 | NM_000346 | 2.00 | 1.70 | |
| POSTN | AW137148 | 5.57 | 2.76 | |
| COL2A1 | X06268 | 21.29 | 1.76 | 3.11 |
| COL11A1 | J04177 | 9.86 | 2.29 | |
| COL1A1 | AI743621 | 2.59 | 1.79 | |
| ACAN | NM_001135 | 9.17 | 2.02 | 2.65 |
*Negative number indicates decreased expression and positive number indicates increased expression (fold change).
**Second microarray using different RNA samples extracted from meniscal explants derived from a different OA patient.
***Results of real-time RC-PCR.
Figure 1Images of normal and OA menisci. Meniscus derived from a male osteosarcoma patient, a male OA patient and a female OA patient. Menisci derived from OA patients exhibited discoloration and rough surface, with clear signs of degeneration whereas the normal control menisci had a smooth and glistening surface, with no signs of degeneration.
Figure 2(a) Positive FCGR3B immunostaining in human tonsil tissue, positive LILRB3 immunostaining in human tonsil tissue, positive FGFR3 immunostaining in human skin tissue, and positive SOX-9 immunostaining in human cartilage tissue. (b) Negative immunostaining of these proteins when primary antibodies were replaced by mouse IgG.
Figure 3Representative images of FCGR3B and LILR3B immunostaining (magnification 10x). (a) FCGR3B immunostaining of normal menisci and OA menisci. (b) LILRB3 immunostaining of normal menisci and OA menisci.
Figure 4Representative images of FGFR3 and SOX-9 immunostaining (magnification 10x). (a) FGFR3 immunostaining of normal menisci and OA menisci. (b) SOX-9 immunostaining of normal menisci and OA menisci.
Grades of immunostaining of FCGR3B, LILRB3, FGFR3, and SOX-9.
| Control | Control | Control | OA | OA | OA | OA | OA | OA | |
|---|---|---|---|---|---|---|---|---|---|
| FCGR3B | 0 | 1 | 0 | 3 | 3 | 2 | 2 | 1 | 1 |
| Mean (FCGR3B) |
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| LILRB3 | 1 | 2 | 1 | 2 | 3 | 3 | 2 | 3 | 3 |
| Mean (LILRB3) |
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| FGFR3 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 1 |
| Mean (FGFR3) |
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| SOX-9 | 3 | 3 | 3 | 2 | 1 | 1 | 1 | 2 | 2 |
| Mean (SOX-9) |
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Ages of the patients are listed in years; M = male; F = female.