| Literature DB >> 25525287 |
Philip A I Guthrie1, Mohammad R Abdollahi1, Tom Gaunt2, Debbie A Lawlor3, Yoav Ben-Shlomo4, John Gallacher5, George Davey Smith3, Ian N M Day1, Santiago Rodriguez1.
Abstract
BACKGROUND: Haptoglobin acts as an antioxidant by limiting peroxidative tissue damage by free hemoglobin. The haptoglobin gene allele Hp2 comprises a 1.7 kb partial duplication. Relative to allele Hp1, Hp2 carriers form protein multimers, suboptimal for hemoglobin scavenging.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25525287 PMCID: PMC4265517 DOI: 10.1155/2014/529456
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Haptoglobin genotype and allele frequency for BWHHS and CaPS cohorts.
| Genotype/Allele | Number (%) [expected number] | |||
|---|---|---|---|---|
| BWHHS | CaPS | |||
| Hp1,1 | 417 (13.3) | [416.2] | 204 (14.4) | [210.9] |
| Hp1,2 | 1447 (46.3) | [1448.5] | 685 (48.4) | [671.2] |
| Hp2,2 | 1261 (40.3) | [1260.2] | 527 (37.2) | [533.9] |
| Hp1 | 2281 (36.5) | 1093 (38.6) | ||
| Hp2 | 3969 (63.5) | 1739 (61.4) | ||
|
| ||||
| BWHHS | CaPS | |||
|
| ||||
| HWE chi2, 1df ( | 0.0 (1.00) | 0.6 (0.44) | ||
Test for difference in allele frequencies between the two cohorts (Chi-square = 3.52, P = 0.06) (N.B. totals for those with valid HP CNV genotype data but not necessarily overlapping other phenotypes).
Association of HP CNV genotype with vitamin C and hemoglobin for BWHHS and CaPS cohorts.
| Means (SD) or |
| ||||
|---|---|---|---|---|---|
| Hp1,1 | Hp1,2 | Hp2,2 | (1df) | ||
| Continuous outcomes: means (SD) | |||||
| BWHHS | Vitamin C ( | 43.53 (27.47) | 44.03 (28.75) | 42.91 (28.26) | 0.51 |
| CaPS | Vitamin C | N/A | N/A | N/A | N/A |
| BWHHS | Hb (g/dL) | 13.45 (1.00) | 13.49 (1.14) | 13.61 (1.00) | 0.002 |
| CaPS | Hb (g/dL) | 14.87 (1.35) | 14.94 (1.05) | 14.91 (1.03) | 0.818 |
Hb: hemoglobin.
Comparison of HP duplicon genotyping results using Koch assay and using Amplification Ratio Control System (ARCS) assay for 64 data points.
| Hp CNV genotype | ||||
|---|---|---|---|---|
| Hp1,1 | Hp1,2 | Hp2,2 | Fail | |
| Koch assay ( | 9 | 25 | 27 | 3 |
| ARCS assay ( | 9 | 24 | 27 | 4 |