Literature DB >> 25519227

Molecular dynamics simulation of spin-lattice NMR relaxation in poly-L-lysine dendrimers: manifestation of the semiflexibility effect.

Denis A Markelov1, Stanislav G Falkovich, Igor M Neelov, Maxim Yu Ilyash, Vladimir V Matveev, Erkki Lähderanta, Petri Ingman, Anatolii A Darinskii.   

Abstract

NMR relaxation experiments are widely used to investigate the local orientation mobility in dendrimers. In particular, the NMR method allows one to measure the spin-lattice relaxation rate, 1/T1, which is connected with the orientational autocorrelation function (ACF) of NMR active groups. We calculate the temperature (Θ) and frequency (ω) dependences of the spin-lattice NMR relaxation rates for segments and NMR active CH2 groups in poly-L-lysine (PLL) dendrimers in water, on the basis of full-atomic molecular dynamics simulations. It is shown that the position of the maximum of 1/T1(ω) depends on the location of the segments inside the dendrimer. This dependence of the maximum is explained by the restricted flexibility of the dendrimer. Such behavior has been predicted recently by the analytical theory based on the semiflexible viscoelastic model. The simulated temperature dependences of 1/T1 for terminal and inner groups in PLL dendrimers of n = 2 and n = 4 generations dissolved in water are in good agreement with the NMR experimental data, which have been obtained for these systems previously by us. It is shown that in the case of PLL dendrimers, the traditional procedure of the interpretation of NMR experimental data - when smaller values of 1/T1 correspond to higher orientation mobility - is applicable to the whole accessible frequency interval only for the terminal groups. For the inner groups, this procedure is valid only at low frequencies.

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Year:  2015        PMID: 25519227     DOI: 10.1039/c4cp04825c

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  9 in total

1.  Molecular dynamics simulation of coarse-grained poly(L-lysine) dendrimers.

Authors:  Ali Rahimi; Sepideh Amjad-Iranagh; Hamid Modarress
Journal:  J Mol Model       Date:  2016-02-17       Impact factor: 1.810

2.  Unexpected Temperature Behavior of Polyethylene Glycol Spacers in Copolymer Dendrimers in Chloroform.

Authors:  Denis A Markelov; Vladimir V Matveev; Petri Ingman; Marianna N Nikolaeva; Anastasia V Penkova; Erkki Lahderanta; Natalia I Boiko; Vladimir I Chizhik
Journal:  Sci Rep       Date:  2016-04-07       Impact factor: 4.379

3.  Comparison of Structure and Local Dynamics of Two Peptide Dendrimers with the Same Backbone but with Different Side Groups in Their Spacers.

Authors:  Sofia E Mikhtaniuk; Valeriy V Bezrodnyi; Oleg V Shavykin; Igor M Neelov; Nadezhda N Sheveleva; Anastasia V Penkova; Denis A Markelov
Journal:  Polymers (Basel)       Date:  2020-07-25       Impact factor: 4.329

4.  Why the Orientational Mobility in Arginine and Lysine Spacers of Peptide Dendrimers Designed for Gene Delivery Is Different?

Authors:  Valeriy V Bezrodnyi; Oleg V Shavykin; Sofia E Mikhtaniuk; Igor M Neelov; Nadezhda N Sheveleva; Denis A Markelov
Journal:  Int J Mol Sci       Date:  2020-12-21       Impact factor: 5.923

5.  Size and Structure of Empty and Filled Nanocontainer Based on Peptide Dendrimer with Histidine Spacers at Different pH.

Authors:  Valeriy V Bezrodnyi; Sofia E Mikhtaniuk; Oleg V Shavykin; Igor M Neelov; Nadezhda N Sheveleva; Denis A Markelov
Journal:  Molecules       Date:  2021-10-29       Impact factor: 4.411

6.  Lysine-based dendrimer with double arginine residues.

Authors:  Nadezhda N Sheveleva; Denis A Markelov; Mikhail A Vovk; Mariya E Mikhailova; Irina I Tarasenko; Peter M Tolstoy; Igor M Neelov; Erkki Lähderanta
Journal:  RSC Adv       Date:  2019-06-07       Impact factor: 4.036

7.  NMR studies of excluded volume interactions in peptide dendrimers.

Authors:  Nadezhda N Sheveleva; Denis A Markelov; Mikhail A Vovk; Maria E Mikhailova; Irina I Tarasenko; Igor M Neelov; Erkki Lähderanta
Journal:  Sci Rep       Date:  2018-06-11       Impact factor: 4.379

8.  Investigation of Melts of Polybutylcarbosilane Dendrimers by 1H NMR Spectroscopy.

Authors:  Vladimir V Matveev; Denis A Markelov; Sergey V Dvinskikh; Andrei N Shishkin; Konstantin V Tyutyukin; Anastasia V Penkova; Elena A Tatarinova; Galina M Ignat'eva; Sergey A Milenin
Journal:  Sci Rep       Date:  2017-10-20       Impact factor: 4.379

9.  Lysine Dendrigraft Nanocontainers. Influence of Topology on Their Size and Internal Structure.

Authors:  Boris Okrugin; Maxim Ilyash; Denis Markelov; Igor Neelov
Journal:  Pharmaceutics       Date:  2018-08-13       Impact factor: 6.321

  9 in total

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