Literature DB >> 25514765

The mechanics of ribosomal translocation.

John Achenbach1, Knud H Nierhaus2.   

Abstract

The ribosome translates the sequence of codons of an mRNA into the corresponding sequence of amino acids as it moves along the mRNA with a codon-step width of about 10 Å. The movement of the million-dalton complex ribosome is triggered by the universal elongation factor G (EF2 in archaea and eukaryotes) and is termed translocation. Unraveling the molecular details of translocation is one of the most challenging tasks of current ribosome research. In the last two years, enormous progress has been obtained by highly-resolved X-ray and cryo-electron microscopic structures as well as by sophisticated biochemical approaches concerning the trigger and control of the movement of the tRNA2·mRNA complex inside the ribosome during translocation. This review inspects and surveys these achievements.
Copyright © 2014 Elsevier B.V. and Société française de biochimie et biologie Moléculaire (SFBBM). All rights reserved.

Entities:  

Keywords:  Control of tRNA(2)·mRNA movement on the ribosome; EF-G dependent GTPase activity; Elongation cycle; Protein synthesis; Translocation

Mesh:

Substances:

Year:  2014        PMID: 25514765     DOI: 10.1016/j.biochi.2014.12.003

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  10 in total

1.  Ribosomal accretion, apriorism and the phylogenetic method: a response to Petrov and Williams.

Authors:  Derek Caetano-Anollés; Gustavo Caetano-Anollés
Journal:  Front Genet       Date:  2015-06-02       Impact factor: 4.599

2.  Recurring RNA structural motifs underlie the mechanics of L1 stalk movement.

Authors:  Srividya Mohan; Harry F Noller
Journal:  Nat Commun       Date:  2017-02-08       Impact factor: 14.919

3.  The structure of an elongation factor G-ribosome complex captured in the absence of inhibitors.

Authors:  Kevin Macé; Emmanuel Giudice; Sophie Chat; Reynald Gillet
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

4.  Structure of the 30S ribosomal decoding complex at ambient temperature.

Authors:  E Han Dao; Frédéric Poitevin; Raymond G Sierra; Cornelius Gati; Yashas Rao; Halil Ibrahim Ciftci; Fulya Akşit; Alex McGurk; Trevor Obrinski; Paul Mgbam; Brandon Hayes; Casper De Lichtenberg; Fatima Pardo-Avila; Nicholas Corsepius; Lindsey Zhang; Matthew H Seaberg; Mark S Hunter; Mengling Liang; Jason E Koglin; Soichi Wakatsuki; Hasan Demirci
Journal:  RNA       Date:  2018-08-23       Impact factor: 4.942

5.  Modulation and Visualization of EF-G Power Stroke During Ribosomal Translocation.

Authors:  Heng Yin; Miriam Gavriliuc; Ran Lin; Shoujun Xu; Yuhong Wang
Journal:  Chembiochem       Date:  2019-09-20       Impact factor: 3.164

6.  Circular code motifs in the ribosome: a missing link in the evolution of translation?

Authors:  Gopal Dila; Raymond Ripp; Claudine Mayer; Olivier Poch; Christian J Michel; Julie D Thompson
Journal:  RNA       Date:  2019-09-10       Impact factor: 4.942

Review 7.  Functions and Regulation of Translation Elongation Factors.

Authors:  Benjin Xu; Ling Liu; Guangtao Song
Journal:  Front Mol Biosci       Date:  2022-01-19

Review 8.  Thinking Outside the Frame: Impacting Genomes Capacity by Programmed Ribosomal Frameshifting.

Authors:  Ricarda J Riegger; Neva Caliskan
Journal:  Front Mol Biosci       Date:  2022-02-14

9.  Structural Studies Reveal the Role of Helix 68 in the Elongation Step of Protein Biosynthesis.

Authors:  Giuseppe Cimicata; Gil Fridkin; Tanaya Bose; Zohar Eyal; Yehuda Halfon; Elinor Breiner-Goldstein; Tara Fox; Ella Zimmerman; Anat Bashan; Natalia de Val; Alexander Wlodawer; Ada Yonath
Journal:  mBio       Date:  2022-03-29       Impact factor: 7.786

Review 10.  Computing the origin and evolution of the ribosome from its structure - Uncovering processes of macromolecular accretion benefiting synthetic biology.

Authors:  Gustavo Caetano-Anollés; Derek Caetano-Anollés
Journal:  Comput Struct Biotechnol J       Date:  2015-07-26       Impact factor: 7.271

  10 in total

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