Literature DB >> 25512605

Novel long noncoding RNAs (lncRNAs) in myogenesis: a miR-31 overlapping lncRNA transcript controls myoblast differentiation.

Monica Ballarino1, Valentina Cazzella1, Daniel D'Andrea2, Luigi Grassi2, Lavinia Bisceglie1, Andrea Cipriano1, Tiziana Santini3, Chiara Pinnarò1, Mariangela Morlando1, Anna Tramontano4, Irene Bozzoni5.   

Abstract

Transcriptome analysis allowed the identification of new long noncoding RNAs differentially expressed during murine myoblast differentiation. These transcripts were classified on the basis of their expression under proliferating versus differentiated conditions, muscle-restricted activation, and subcellular localization. Several species displayed preferential expression in dystrophic (mdx) versus wild-type muscles, indicating their possible link with regenerative processes. One of the identified transcripts, lnc-31, even if originating from the same nuclear precursor of miR-31, is produced by a pathway mutually exclusive. We show that lnc-31 and its human homologue hsa-lnc-31 are expressed in proliferating myoblasts, where they counteract differentiation. In line with this, both species are more abundant in mdx muscles and in human Duchenne muscular dystrophy (DMD) myoblasts, than in their normal counterparts. Altogether, these data suggest a crucial role for lnc-31 in controlling the differentiation commitment of precursor myoblasts and indicate that its function is maintained in evolution despite the poor sequence conservation with the human counterpart.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 25512605      PMCID: PMC4301723          DOI: 10.1128/MCB.01394-14

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  46 in total

1.  Muscle satellite cells are primed for myogenesis but maintain quiescence with sequestration of Myf5 mRNA targeted by microRNA-31 in mRNP granules.

Authors:  Colin G Crist; Didier Montarras; Margaret Buckingham
Journal:  Cell Stem Cell       Date:  2012-07-06       Impact factor: 24.633

2.  MicroRNAs involved in molecular circuitries relevant for the Duchenne muscular dystrophy pathogenesis are controlled by the dystrophin/nNOS pathway.

Authors:  Davide Cacchiarelli; Julie Martone; Erika Girardi; Marcella Cesana; Tania Incitti; Mariangela Morlando; Carmine Nicoletti; Tiziana Santini; Olga Sthandier; Laura Barberi; Alberto Auricchio; Antonio Musarò; Irene Bozzoni
Journal:  Cell Metab       Date:  2010-08-19       Impact factor: 27.287

Review 3.  Dial M(RF) for myogenesis.

Authors:  Natalia Moncaut; Peter W J Rigby; Jaime J Carvajal
Journal:  FEBS J       Date:  2013-07-05       Impact factor: 5.542

4.  A gene with homology to the myc similarity region of MyoD1 is expressed during myogenesis and is sufficient to activate the muscle differentiation program.

Authors:  D G Edmondson; E N Olson
Journal:  Genes Dev       Date:  1989-05       Impact factor: 11.361

5.  Cyclins and cyclin-dependent kinases are differentially regulated during terminal differentiation of C2C12 muscle cells.

Authors:  L Jahn; J Sadoshima; S Izumo
Journal:  Exp Cell Res       Date:  1994-06       Impact factor: 3.905

6.  Distinctive patterns of microRNA expression in primary muscular disorders.

Authors:  Iris Eisenberg; Alal Eran; Ichizo Nishino; Maurizio Moggio; Costanza Lamperti; Anthony A Amato; Hart G Lidov; Peter B Kang; Kathryn N North; Stella Mitrani-Rosenbaum; Kevin M Flanigan; Lori A Neely; Duncan Whitney; Alan H Beggs; Isaac S Kohane; Louis M Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

Review 7.  Biogenesis and function of non-coding RNAs in muscle differentiation and in Duchenne muscular dystrophy.

Authors:  Shyam Twayana; Ivano Legnini; Marcella Cesana; Davide Cacchiarelli; Mariangela Morlando; Irene Bozzoni
Journal:  Biochem Soc Trans       Date:  2013-08       Impact factor: 5.407

8.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

9.  CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model.

Authors:  Liguo Wang; Hyun Jung Park; Surendra Dasari; Shengqin Wang; Jean-Pierre Kocher; Wei Li
Journal:  Nucleic Acids Res       Date:  2013-01-17       Impact factor: 16.971

10.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937

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  43 in total

1.  Linc-smad7 promotes myoblast differentiation and muscle regeneration via sponging miR-125b.

Authors:  Chengchuang Song; Jian Wang; Yilei Ma; Zhaoxin Yang; Dong Dong; Hui Li; Jiameng Yang; Yongzhen Huang; Martin Plath; Yun Ma; Hong Chen
Journal:  Epigenetics       Date:  2018-08-06       Impact factor: 4.528

2.  SP1-induced AFAP1-AS1 contributes to proliferation and invasion by regulating miR-497-5p/CELF1 pathway in nasopharyngeal carcinoma.

Authors:  Hui Jin; Gengtian Liang; Liping Yang; Li Liu; Binru Wang; Fengqin Yan
Journal:  Hum Cell       Date:  2021-01-05       Impact factor: 4.174

3.  Identification of linc-NeD125, a novel long non coding RNA that hosts miR-125b-1 and negatively controls proliferation of human neuroblastoma cells.

Authors:  Valeria Bevilacqua; Ubaldo Gioia; Valerio Di Carlo; Anna F Tortorelli; Teresa Colombo; Irene Bozzoni; Pietro Laneve; Elisa Caffarelli
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Transcription Factor Hepatocyte Nuclear Factor-1β (HNF-1β) Regulates MicroRNA-200 Expression through a Long Noncoding RNA.

Authors:  Sachin S Hajarnis; Vishal Patel; Karam Aboudehen; Massimo Attanasio; Patricia Cobo-Stark; Marco Pontoglio; Peter Igarashi
Journal:  J Biol Chem       Date:  2015-08-19       Impact factor: 5.157

Review 5.  Function and regulation of microRNA-31 in development and disease.

Authors:  Nadezda A Stepicheva; Jia L Song
Journal:  Mol Reprod Dev       Date:  2016-08-02       Impact factor: 2.609

6.  Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs.

Authors:  Diogo M Ribeiro; Andreas Zanzoni; Andrea Cipriano; Riccardo Delli Ponti; Lionel Spinelli; Monica Ballarino; Irene Bozzoni; Gian Gaetano Tartaglia; Christine Brun
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

Review 7.  Mouse models of Down syndrome: gene content and consequences.

Authors:  Meenal Gupta; A Ranjitha Dhanasekaran; Katheleen J Gardiner
Journal:  Mamm Genome       Date:  2016-08-18       Impact factor: 2.957

8.  The discovery potential of RNA processing profiles.

Authors:  Amadís Pagès; Ivan Dotu; Joan Pallarès-Albanell; Eulàlia Martí; Roderic Guigó; Eduardo Eyras
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

Review 9.  Noncoding RNAs in the regulation of skeletal muscle biology in health and disease.

Authors:  Adriana Simionescu-Bankston; Ashok Kumar
Journal:  J Mol Med (Berl)       Date:  2016-07-04       Impact factor: 4.599

10.  Long noncoding RNAs and their roles in skeletal muscle fate determination.

Authors:  Mackenzie Hagan; Mi Zhou; Muhammad Ashraf; Il-Man Kim; Huabo Su; Neal L Weintraub; Yaoliang Tang
Journal:  Noncoding RNA Investig       Date:  2017-12-13
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