Literature DB >> 25511423

What do we know about ribosomal RNA methylation in Escherichia coli?

O V Sergeeva1, A A Bogdanov2, P V Sergiev2.   

Abstract

A ribosome is a ribonucleoprotein that performs the synthesis of proteins. Ribosomal RNA of all organisms includes a number of modified nucleotides, such as base or ribose methylated and pseudouridines. Methylated nucleotides are highly conserved in bacteria and some even universally. In this review we discuss available data on a set of modification sites in the most studied bacteria, Escherichia coli. While most rRNA modification enzymes are known for this organism, the function of the modified nucleotides is rarely identified.
Copyright © 2014 Elsevier B.V. and Société française de biochimie et biologie Moléculaire (SFBBM). All rights reserved.

Entities:  

Keywords:  Escherichia coli; Modification; RNA methyltransferase; Ribosome; Ribosome assembly; rRNA

Mesh：

Substances：

Year:  2014        PMID： 25511423     DOI： 10.1016/j.biochi.2014.11.019

Source DB:  PubMed          Journal:  Biochimie        ISSN： 0300-9084            Impact factor:   4.079


  35 in total

1.  TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs.

Authors:  Annkatrin Bressin; Roman Schulte-Sasse; Davide Figini; Erika C Urdaneta; Benedikt M Beckmann; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

2.  Mapping of ribosomal 23S ribosomal RNA modifications in Clostridium sporogenes.

Authors:  Finn Kirpekar; Lykke H Hansen; Julie Mundus; Stine Tryggedsson; Patrícia Teixeira Dos Santos; Eleni Ntokou; Birte Vester
Journal:  RNA Biol       Date:  2018-08-13       Impact factor: 4.652

3.  Shared requirements for key residues in the antibiotic resistance enzymes ErmC and ErmE suggest a common mode of RNA recognition.

Authors:  Sebastian J Rowe; Ryan J Mecaskey; Mohamed Nasef; Rachel C Talton; Rory E Sharkey; Joshua C Halliday; Jack A Dunkle
Journal:  J Biol Chem       Date:  2020-10-05       Impact factor: 5.157

4.  Visualization of chemical modifications in the human 80S ribosome structure.

Authors:  S Kundhavai Natchiar; Alexander G Myasnikov; Hanna Kratzat; Isabelle Hazemann; Bruno P Klaholz
Journal:  Nature       Date:  2017-11-15       Impact factor: 49.962

5.  Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation.

Authors:  Wei Wang; Wanqiu Li; Xueliang Ge; Kaige Yan; Chandra Sekhar Mandava; Suparna Sanyal; Ning Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-22       Impact factor: 11.205

6.  Radical SAM-Mediated Methylation of Ribosomal RNA.

Authors:  Vanja Stojković; Danica Galonić Fujimori
Journal:  Methods Enzymol       Date:  2015-04-25       Impact factor: 1.600

7.  Sources of thymidine and analogs fueling futile damage-repair cycles and ss-gap accumulation during thymine starvation in Escherichia coli.

Authors:  T V Pritha Rao; Andrei Kuzminov
Journal:  DNA Repair (Amst)       Date:  2019-01-16

8.  Studies on Aminoglycoside Susceptibility Identify a Novel Function of KsgA To Secure Translational Fidelity during Antibiotic Stress.

Authors:  Jin Zou; Wenwen Zhang; Hongjie Zhang; Xiaohua Douglas Zhang; Bo Peng; Jun Zheng
Journal:  Antimicrob Agents Chemother       Date:  2018-09-24       Impact factor: 5.191

Review 9.  Mutations in RNA methylating enzymes in disease.

Authors:  Vanja Stojković; Danica Galonić Fujimori
Journal:  Curr Opin Chem Biol       Date:  2017-10-20       Impact factor: 8.822

10.  Improved RNA modification mapping of cellular non-coding RNAs using C- and U-specific RNases.

Authors:  Priti Thakur; Mariana Estevez; Peter A Lobue; Patrick A Limbach; Balasubrahmanyam Addepalli
Journal:  Analyst       Date:  2020-02-03       Impact factor: 4.616
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